Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120609.seq
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1576 - 27862043-27862129,27862935-27862988,27863042-278632...    33   0.28 
12_01_1023 + 10458092-10458397,10459126-10459254,10459335-104595...    28   6.1  
08_01_0376 - 3320621-3321151                                           28   6.1  

>07_03_1576 -
           27862043-27862129,27862935-27862988,27863042-27863243,
           27865015-27865249,27865338-27865404,27865489-27865639,
           27866898-27866957,27867402-27867466
          Length = 306

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +2

Query: 281 LDTCKHQLCSMCXXXXXXXXXXTCPLCR-----VESLHFNVYSINRNVVDV 418
           L TC H +C  C          +CP CR     V S    +Y+ NR++VD+
Sbjct: 178 LPTCSHAMCIKCYRDWRSRSQ-SCPFCRDSLKRVNSADLWIYTDNRDIVDI 227


>12_01_1023 +
           10458092-10458397,10459126-10459254,10459335-10459553,
           10459649-10459987,10460095-10460199,10460697-10460807,
           10461438-10461688,10462023-10462146,10462440-10462716,
           10463212-10463357,10463449-10463598,10463678-10463910,
           10464246-10464375,10464406-10464510,10464636-10464914
          Length = 967

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 132 LVLFSANRRRCSRLKMEFVKLQCNICFSVAEIKNYFMQPID 254
           ++LFS ++R C  L M+  K+  N     A I+  F   +D
Sbjct: 315 VILFSFSKRECEFLAMQMAKMDLNDDDEKANIETIFWSAMD 355


>08_01_0376 - 3320621-3321151
          Length = 176

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +2

Query: 272 VLELDTCKHQLCSMCXXXXXXXXXXTCPLCRVESL 376
           V EL  C H     C          TCPLCR   L
Sbjct: 120 VRELGNCAHAFHKACIDKWVDKGQATCPLCRAALL 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,187,460
Number of Sequences: 37544
Number of extensions: 272983
Number of successful extensions: 669
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)