Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120609.seq
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)              31   0.89 
SB_13238| Best HMM Match : rve (HMM E-Value=1.1e-13)                   29   2.7  
SB_28707| Best HMM Match : rve (HMM E-Value=0.011)                     28   6.2  
SB_9027| Best HMM Match : Phage_fiber_2 (HMM E-Value=5.8)              28   6.2  

>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +3

Query: 3   ARGC-FW-----DTK*LIQKTTFCETTLYQEQIRTLLWAAASAHWQVLRLVLFSANRR 158
           AR C FW     + K L      C+T    +Q  TL+   A A W+++ +VLFS N +
Sbjct: 526 ARECIFWPGMPAEIKQLASVCDACQTFAKAQQKETLIAIEAKAPWEIVGVVLFSWNNK 583


>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
          Length = 337

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 290 CKHQLCSMCXXXXXXXXXXTCPLCRV 367
           C+H+ C MC           CP+CR+
Sbjct: 52  CEHEFCKMCFTQNVQEANLQCPMCRI 77


>SB_13238| Best HMM Match : rve (HMM E-Value=1.1e-13)
          Length = 637

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +3

Query: 3   ARGC-FW-----DTK*LIQKTTFCETTLYQEQIRTLLWAAASAHWQVLRLVLFSANRR 158
           AR C FW     + K L      C+T    +Q +TL+   A A W+++ + LFS N +
Sbjct: 452 ARECIFWPGMSAEIKQLASVCDACQTFAKAQQKKTLITIEAKAPWEIVGVDLFSWNNK 509


>SB_28707| Best HMM Match : rve (HMM E-Value=0.011)
          Length = 173

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = +3

Query: 3   ARGC-FW-----DTK*LIQKTTFCETTLYQEQIRTLLWAAASAHWQVLRLVLFSANRR 158
           AR C FW     + K L      C+T    +Q  TL+   A A W+++ + LFS N +
Sbjct: 32  ARECIFWPGMSAEIKQLASVCDACQTFSKAQQKETLITKEAKAPWEIVGVDLFSWNNK 89


>SB_9027| Best HMM Match : Phage_fiber_2 (HMM E-Value=5.8)
          Length = 320

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +1

Query: 508 SLLDDAEDSXNAANSDDTMLSESQA---XLKKLXIDIAEQT 621
           S+ DD+E++ N A++DDT+  +  A     +K  I IAE T
Sbjct: 12  SITDDSEETENHASTDDTVKKKVHADERSSRKYAIPIAELT 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,061,738
Number of Sequences: 59808
Number of extensions: 332060
Number of successful extensions: 709
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)