Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120609.seq
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016666-6|AAB66086.1|  292|Caenorhabditis elegans Hypothetical ...    35   0.048
AF016666-4|AAB66082.1|  331|Caenorhabditis elegans Hypothetical ...    30   1.4  
U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical ...    29   2.4  
AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical p...    28   5.5  
X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.        28   5.5  
U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of l...    28   5.5  
U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of l...    28   5.5  
U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of l...    28   5.5  
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AC017117-2|AAF16617.1|  295|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AF016666-6|AAB66086.1|  292|Caenorhabditis elegans Hypothetical
           protein B0281.8 protein.
          Length = 292

 Score = 35.1 bits (77), Expect = 0.048
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +2

Query: 290 CKHQLCSMCXXXXXXXXXXTCPLCR--VESLHFNVYSINRN--VVDVIKCSVTSVAQWNK 457
           C H LC  C           CP CR   E   +N+ S+++N  ++ +IK  VT   +  K
Sbjct: 28  CSHTLCEGCIKKLLKNGRVVCPFCREPTEVPVYNIKSLHKNFSLIQMIKI-VTKTTEVEK 86

Query: 458 INDNF 472
             DNF
Sbjct: 87  NWDNF 91


>AF016666-4|AAB66082.1|  331|Caenorhabditis elegans Hypothetical
           protein B0281.3 protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +2

Query: 290 CKHQLCSMCXXXXXXXXXXTCPLCR--VESLHFNVYSINRN--VVDVIKCSVTSVAQ 448
           C H LC  C           CP CR   E    N+ S+++N  ++ VIK ++   A+
Sbjct: 57  CCHTLCEGCIKKLLNYSRIVCPFCREPTEVPGNNIKSLHKNFSLIQVIKTTLVEEAE 113


>U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical
           protein R02E12.4 protein.
          Length = 639

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 287 TCKHQLCSMCXXXXXXXXXXTCPLC--RVESLHFN 385
           TCKH +C+ C           CP+C  RV  +H N
Sbjct: 41  TCKHSICAGC-AGRWLSSCSVCPMCRTRVREIHLN 74


>AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical
           protein F40G9.14 protein.
          Length = 261

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +2

Query: 290 CKHQLCSMCXXXXXXXXXXTCPLCRVESLHFNVYSINRNVVDVI 421
           C H  C  C           CP C   S   N +S N+ +++V+
Sbjct: 158 CGHTYCESCIQVCKHQFQIKCPFCTTTSYQIN-FSTNKLILEVL 200


>AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical
           protein F42G2.5 protein.
          Length = 374

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 290 CKHQLCSMCXXXXXXXXXXTCPLCRVESLHFNVYSINRN 406
           C H +C  C           CP CR E+   +V S+ +N
Sbjct: 155 CGHSICQSCASKLAKNCVILCPFCRNETNVSSVASLPKN 193


>Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical
           protein C55A6.1 protein.
          Length = 228

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 263 IIPVLELDTCKHQLCSMCXXXXXXXXXXTCPLCRVESLHFNVYSINRNVVDV 418
           I+P   +  C H+ C +C           CP+CR   +  N+++    V+D+
Sbjct: 20  IVPTT-IPACGHKFCFICLKGVYMNDMGGCPMCR-GPIDSNIFAQPSQVLDL 69


>X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.
          Length = 582

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +2

Query: 275 LELDTCKHQLCSMC--XXXXXXXXXXTCPLCRVESLHFNVYSINRNVVDVIK 424
           ++++ C H LC+ C            TCP CR E     +   NR ++D  K
Sbjct: 400 IKIEPCGHLLCAKCLANWQDSDGGGNTCPFCRYE-----IKGTNRVIIDRFK 446


>U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform a protein.
          Length = 582

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +2

Query: 275 LELDTCKHQLCSMC--XXXXXXXXXXTCPLCRVESLHFNVYSINRNVVDVIK 424
           ++++ C H LC+ C            TCP CR E     +   NR ++D  K
Sbjct: 400 IKIEPCGHLLCAKCLANWQDSDGGGNTCPFCRYE-----IKGTNRVIIDRFK 446


>U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform b protein.
          Length = 565

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +2

Query: 275 LELDTCKHQLCSMC--XXXXXXXXXXTCPLCRVESLHFNVYSINRNVVDVIK 424
           ++++ C H LC+ C            TCP CR E     +   NR ++D  K
Sbjct: 383 IKIEPCGHLLCAKCLANWQDSDGGGNTCPFCRYE-----IKGTNRVIIDRFK 429


>U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform c protein.
          Length = 523

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +2

Query: 275 LELDTCKHQLCSMC--XXXXXXXXXXTCPLCRVESLHFNVYSINRNVVDVIK 424
           ++++ C H LC+ C            TCP CR E     +   NR ++D  K
Sbjct: 383 IKIEPCGHLLCAKCLANWQDSDGGGNTCPFCRYE-----IKGTNRVIIDRFK 429


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = +2

Query: 281 LDTCKHQLCSMCXXXXXXXXXXTCPLCRVESLHFNVYSINRNVVDVIKCSVTSVAQ--WN 454
           + +C H LCS C           CP+C+   +    Y   R +V+  K + T + +  WN
Sbjct: 51  VSSCNHSLCSQC-----FDKFTECPICKEPLVRSENYQA-RKIVEHFKENPTMIIEKWWN 104

Query: 455 KINDNFDAAS 484
              +  +  S
Sbjct: 105 STANGSETCS 114


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +2

Query: 287 TCKHQLCSMCXXXXXXXXXXTCPLCR 364
           TC H LC  C           CP CR
Sbjct: 26  TCGHALCHKCITAMVNNSTVECPFCR 51


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical
           protein T13H2.5a protein.
          Length = 2471

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = +2

Query: 290 CKHQLCSMCXXXXXXXXXXTCPLCR 364
           C H+ C  C          TCP CR
Sbjct: 178 CGHRFCDQCILVAFMRSGNTCPTCR 202


>AC017117-2|AAF16617.1|  295|Caenorhabditis elegans Hypothetical
           protein F43C11.7 protein.
          Length = 295

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = +2

Query: 287 TCKHQLCSMCXXXXXXXXXXTCPLCR 364
           TC H +C  C           CP CR
Sbjct: 26  TCGHSICKACSSKLVSNFKILCPFCR 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,305,667
Number of Sequences: 27780
Number of extensions: 257731
Number of successful extensions: 586
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)