Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120609.seq
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger) fa...    29   3.9  
At1g24580.1 68414.m03092 zinc finger (C3HC4-type RING finger) fa...    29   3.9  

>At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 finger protein
           RHA2b [Arabidopsis thaliana] GI:3790571; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 211

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = +2

Query: 278 ELDTCKHQLCSMCXXXXXXXXXXTCPLCR--VESLH 379
           E+ TC H     C          +CPLCR  V+ LH
Sbjct: 175 EMPTCSHYFHEPCLTEWLTRDNNSCPLCRKPVDKLH 210


>At1g24580.1 68414.m03092 zinc finger (C3HC4-type RING finger)
           family protein
          Length = 113

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +2

Query: 272 VLELDTCKHQLCSMCXXXXXXXXXXTCPLCR 364
           V EL +CKH     C          TCPLCR
Sbjct: 80  VSELVSCKHFFHRACLDNWFGNNHTTCPLCR 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,051,946
Number of Sequences: 28952
Number of extensions: 221977
Number of successful extensions: 498
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)