Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120607.seq
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    29   0.84 
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.9  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    27   3.4  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.5  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    26   4.5  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   7.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.9  

>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 591 SRFSVASSHNHFVGKQNERSVASAKXALPP 502
           S FS + SHNH    Q E+S +++K ++ P
Sbjct: 537 SPFSKSKSHNHHPSSQVEKSTSNSKGSMLP 566


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 199 STSTASTNRRLSMPTKSSTCSR*RGKAGRPAVFAPTHSAHYQI 327
           S+S+ S++R  S  T   T S  +  + RP VF  T  +HY I
Sbjct: 163 SSSSKSSSRSSSRTTSHRTTSH-KSSSYRPTVFPYTTISHYNI 204


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 631 VRRFRGARXRNLAEPFQRRVEPQSF 557
           VRR+R    R L  PF+R  +P+ F
Sbjct: 222 VRRYRDGSGRQLFAPFERLPDPRMF 246


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 178 IVNGQYVSTSTASTNRRLSMPTKSSTCS 261
           I  G Y STS +ST+   + P+ SST S
Sbjct: 129 ISGGIYSSTSASSTSSSTATPSSSSTTS 156


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -3

Query: 587 VSASRRATIISLANKMSDRL--LPPNXRCH 504
           V+  RR + ISLAN++S  L   PP+ R H
Sbjct: 683 VTEPRRISAISLANRVSQELGGNPPSARSH 712


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 117 GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 242
           GDE     V+ D  S    V+  +   ++  GKY+ TF H D
Sbjct: 48  GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 597 LPSRFSVASSHNHFVGKQNERSVASAKXALPP 502
           LPSR S  +  +    KQNE   +++  ALPP
Sbjct: 707 LPSRISEVTEDSIDEDKQNEVDPSTSARALPP 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,110
Number of Sequences: 5004
Number of extensions: 51813
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)