Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120607.seq
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)                 29   2.7  
SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)                 29   2.7  
SB_19726| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_45993| Best HMM Match : TEP1_N (HMM E-Value=0.48)                   28   8.3  

>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 306 CGCKYSGSPCFATLSGACAGFGRHAQTSICTCRRRGHVLPVHNLHILNCWRCPW 145
           C C Y G+     +S   A   R A+  +CT  R   +L  +N  + NC RC +
Sbjct: 175 CVCVYGGTG----ISEQIAELKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTY 224


>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 511 RXFGGSNRSLILFANEMIVARRDAETARQDFXNARRENGALGQPHGGHXARRD 669
           R  GG+ R       +    RRD +  R+D    RR++G   + HGG   RRD
Sbjct: 60  RDHGGTGRDHGGTGRDHGGTRRDHDGTRRDHGGTRRDHGGTRRDHGG--TRRD 110



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 589 ARQDFXNARRENGALGQPHGGHXARRD 669
           +R+D  + RR++G  G+ HGG   RRD
Sbjct: 2   SRRDHGSTRRDHGGTGRDHGG--TRRD 26



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 574 RDAETARQDFXNARRENGALGQPHGG 651
           RD    R+D    RR++G  G+ HGG
Sbjct: 18  RDHGGTRRDHGGTRRDHGGTGRDHGG 43


>SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)
          Length = 333

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 259 SMCWIWSACSNVDLYLPSTWTRI 191
           SMC +++ C N+ L++P T+  I
Sbjct: 258 SMCTVYNVCKNIPLHIPQTFLHI 280


>SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)
          Length = 323

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 301 VQIQRVALLCHAIWSMCWIWSACS--NVDLYLPST 203
           V +QRV ++C  +W  C I+SA +   V +Y P T
Sbjct: 157 VTVQRVLIICGGMWVSCSIFSAVTLYGVHVYHPVT 191


>SB_19726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 259 SMCWIWSACSNVDLYLPSTWTRI 191
           SMC +++ C N+ L++P T+  I
Sbjct: 121 SMCTVYNVCKNIPLHIPQTFLHI 143


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 248 PAHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSXLXYAIXLQEWL-LEEVIP-QVL 418
           P +    + K   P   HP TVLI    +I L + + L   I LQ  L L+ +IP QVL
Sbjct: 316 PLYKSSPLYKSSPPTSTHPSTVLIPLQVLIPLQVLTPLQVLIPLQVLLPLQVLIPLQVL 374


>SB_45993| Best HMM Match : TEP1_N (HMM E-Value=0.48)
          Length = 369

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 327 DLVMSTVCGCKYSGSPCFATLSGACAG 247
           D+VM TV GC+YS S  + +L   C G
Sbjct: 248 DVVMRTVRGCRYSDS-AWMSLCAQCVG 273


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,424,848
Number of Sequences: 59808
Number of extensions: 437534
Number of successful extensions: 1058
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)