Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120600.Seq
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    24   1.4  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    23   2.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.8  

>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 389 LSCRRMY-THHTLLVYRVVAMIIQCVLSCL 303
           L+C  M  TH T+  ++++ ++  C ++CL
Sbjct: 195 LACGVMVVTHITMAHFKIIQVVPYCYINCL 224


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 601 FGFDETQFEILAAFTLKIVFHAGGGFVVVRLRCD 500
           FG+D+ Q+  +    + + F    G V + L CD
Sbjct: 239 FGYDKKQYIGVVVANVGVAFMINVGTVTLILSCD 272


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 385 PAAECTRTTPCW 350
           P A CT +T CW
Sbjct: 524 PWANCTASTRCW 535


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 378 QNVHAPHLVGVQSRRHDY 325
           +N H PH +  +SRR  Y
Sbjct: 600 RNFHGPHRLAARSRRCCY 617


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 378 QNVHAPHLVGVQSRRHDY 325
           +N H PH +  +SRR  Y
Sbjct: 492 RNFHGPHRLAARSRRCCY 509


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,436
Number of Sequences: 336
Number of extensions: 3505
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)