Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120600.Seq
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    28   1.2  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    28   1.6  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    27   3.6  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    26   4.8  
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    26   6.3  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   6.3  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   8.4  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   8.4  

>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 6   ENVAFLAPLSASANIFNYMAELATRAGKQPSMFQNATFLTSAANAVN 146
           E ++FL  ++ +A     MA +A +     S+FQN+ +L    + +N
Sbjct: 708 EKLSFLYLITGNAEKLQKMAIIAEKRNDTLSLFQNSLYLNEVESRIN 754


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = +1

Query: 361 WCVYILR----QDNGKLYTGITSNLNRRIKQHSNK 453
           +C Y+L+    Q +G +Y G T +  RR++QH+ +
Sbjct: 7   YCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGE 41


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 53  QLHGRAGDASRQATQHVPKRYLPNVGRQRGQF 148
           + H R+ DAS +A +   + + P++ R+R +F
Sbjct: 510 RFHSRSVDASPKAVRRESRSFFPSLTRKRSKF 541


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 539 CGRRFCSRTPPL*YTSRKLVALRKHLAPCLFECCFMRLLRLLVMPVY 399
           CG  FCS       T  K   LRK   PC  + C  R+ +  + P+Y
Sbjct: 167 CGHLFCS-------TCAK--ELRKKTVPCPVQHCRKRITKKFIFPLY 204


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 473 ATQPIYGSCITAEAYDYKTAARMEYNLKR 559
           AT+ I G+C  A A D  +A    YN  R
Sbjct: 46  ATEEIIGTCANASAKDVDSAVENAYNTFR 74


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 479  ALRKHLAPCLFECCFMRLLRLLVMPV 402
            +L +H  PC+ + CF + LR  ++ +
Sbjct: 1298 SLMQHFLPCILDSCFSKNLRYSMLGI 1323


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +3

Query: 33  SASANIFNYMAELATRAGKQPSMFQNATFLTSAANAVNSPAAHLTKNACKDSLT 194
           S SA++ + +A   +    +PS   ++T       +VNSPA   ++     S+T
Sbjct: 170 SPSASVSSKVASSVSYVSSEPSDSSSSTNTVILTTSVNSPAVSSSETLTSVSIT 223


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +3

Query: 426 QTHKTAFEQTRRQVFAQRNQFTARVSQRRRTTTKPPPAWNTILSVNAASISNCVS 590
           QT+        R++FA+RN F  R  +  R   K      +++  +   + N VS
Sbjct: 308 QTYVNMMNDNIRKIFAERNPFIFRFVKSLRNLEKFDDIGPSVILASPGMLQNGVS 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,043
Number of Sequences: 5004
Number of extensions: 56187
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)