Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120600.Seq
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1)             29   3.9  
SB_21037| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_20535| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_7910| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_6395| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)          28   6.7  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      28   6.7  
SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1)
          Length = 535

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +3

Query: 411 HEQP*QTHKTAFEQTRRQVFAQRNQFTARVSQRRRTTTKPPPA 539
           H Q  Q+HK +  + R+  FA  + +    +   +  + PPP+
Sbjct: 41  HSQDLQSHKDSKTEERKSAFASSDSWNVTSNSSNQQNSSPPPS 83


>SB_21037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 532 GGFVVVRLRCDTRAVNWLRCANTWR-LVCSNAV 437
           G F+V R      A+ WLRC   WR +V S+A+
Sbjct: 124 GCFIVWREIVTNSAIEWLRCFIVWRGIVSSSAI 156



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 526 FVVVRLRCDTRAVNWLRCANTWRLVCSNAVL 434
           F+V R      A+ WLRC   WR + +N+ +
Sbjct: 37  FIVWRGIVTNSAIKWLRCFIVWRGIVTNSAI 67



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 526 FVVVRLRCDTRAVNWLRCANTWRLVCSNAVL 434
           F+V R      A+ WLRC   WR + +N+ +
Sbjct: 55  FIVWRGIVTNSAIKWLRCFIVWRGIVTNSAI 85



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 526 FVVVRLRCDTRAVNWLRCANTWRLVCSNAVL 434
           F+V R      A+ WLRC   WR + +++V+
Sbjct: 73  FIVWRGIVTNSAIEWLRCFIVWRGIVTSSVI 103


>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 304  KHERTHCIIMATTLYTNKVWCVYILRQDNGKLYTGITSNLNRR 432
            KH+R  C++    L  N  + ++I+  D+ K     + +L RR
Sbjct: 1471 KHKRNLCVMNVVLLVPNVYYSLHIVLHDDAKCVANTSFDLRRR 1513


>SB_20535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 526 FVVVRLRCDTRAVNWLRCANTWRLVCSNAVL 434
           F+V R    + A+ WLRC   WR + +N+ +
Sbjct: 82  FIVWRGIVTSSAIEWLRCFIVWRGIVTNSAI 112



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 526 FVVVRLRCDTRAVNWLRCANTWRLVCSNAVL 434
           F+V R      A+ WLRC   WR + +N+ +
Sbjct: 100 FIVWRGIVTNSAIEWLRCFIVWRGIVTNSAI 130



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 526 FVVVRLRCDTRAVNWLRCANTWR-LVCSNAV 437
           F+V R      A+ WLRC   WR +V S+A+
Sbjct: 46  FIVWREIVTNSAIEWLRCFIVWRGIVTSSAI 76



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 526 FVVVRLRCDTRAVNWLRCANTWR-LVCSNAV 437
           F+V R    + A+ WLRC   WR +V S+A+
Sbjct: 136 FIVWRGIVTSSAIEWLRCFIVWREIVTSSAI 166


>SB_7910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 385 DNGKLYTGITSNLNRRIKQ-HSNKQGAKCLRNATNLRLVYHSGGVRLQN 528
           D      GI + +  RIK+ H N +   CL +A NL +V+      ++N
Sbjct: 308 DGASNMAGIRNGVQARIKEVHPNAEYVHCLAHALNLSIVHRCDDSIIRN 356


>SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 370 YILRQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHSGG 513
           + L QD+ ++ + I S   R+  +H  +    C R+   L+ VY   G
Sbjct: 175 FFLYQDDQEVESKIESTSGRKTVKHKERVSRNCARDVQGLKRVYTGPG 222


>SB_6395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1093

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = +1

Query: 277  RGRA*RHSAKHERTHCIIMATTLYT-NKVWCVYILRQDNGKLYTGITSNLNRRIKQHSNK 453
            RGR   ++   ER   I  + T Y  NK W  Y    DNGK YT      + + K+H   
Sbjct: 912  RGRPPVYAIGEERMDSIRRSKTKYMLNKEW--YCAVCDNGKNYTLAGKPCHLKTKKHQKT 969

Query: 454  QGAKCLRNATNLRL 495
                 +R     RL
Sbjct: 970  HLTPWIRQTRRTRL 983


>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
          Length = 1571

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 69   LATRAGKQPSMFQNATFL-TSAANAVNSPAAHLTKNACK 182
            + T A  +P M QNAT L TS  NA      H+  NA K
Sbjct: 1199 MPTNATMEPEMEQNATALPTSPLNATLLAPTHMYMNATK 1237


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = +2

Query: 443  IRTNKAPSVCATQPIYGSCITAEAYDYKTAARMEYNLKRKCSKYFKLRLI 592
            I   KA  VC T     S  T  A D KT A   +   R C +Y KLR+I
Sbjct: 1061 ISNGKAECVCPTVDQCPSGSTVCASDGKTYASECHVKVRNCGRYPKLRVI 1110


>SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 301 AKHERTHCIIMATTLYTNKVWCVYILRQDNGKLYTGITSNLNRRI 435
           A H    C ++ T  +   V CV IL    G LYTG  S L+  I
Sbjct: 237 ASHRLLFCSLIGTGYHLALVACVVILFTIMGDLYTGRGSILSATI 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,616,309
Number of Sequences: 59808
Number of extensions: 467163
Number of successful extensions: 1266
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)