Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120599.Seq
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   102   5e-23
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   102   5e-23
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    29   0.82 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   4.4  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   4.4  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   5.8  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    26   5.8  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   7.6  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   7.6  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  102 bits (244), Expect = 5e-23
 Identities = 46/65 (70%), Positives = 55/65 (84%)
 Frame = +1

Query: 55  KRAPIRKKRKYELGRPAANTRLGPRRIHSVRSRGGNTEYRALRLDTGNFSWGSECSTRKT 234
           KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN ++RALRLD+GNFSWGSE  ++KT
Sbjct: 17  KRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKT 76

Query: 235 RIIDV 249
           RII V
Sbjct: 77  RIIQV 81



 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 42/84 (50%), Positives = 52/84 (61%)
 Frame = +3

Query: 261 SNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKT 440
           SNNELVRT TL K+AIV +DA PFR WYE+HY + +G  KG K T          +S+  
Sbjct: 86  SNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATSTP-----NPKSKHV 139

Query: 441 ARKYLARQRLAKVEGALEEQFHTG 512
            RK+ AR   +KV+ ALE QF  G
Sbjct: 140 QRKHSARLGDSKVDSALETQFAAG 163



 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 26/38 (68%), Positives = 31/38 (81%)
 Frame = +2

Query: 509 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 622
           GRL A V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  102 bits (244), Expect = 5e-23
 Identities = 46/65 (70%), Positives = 55/65 (84%)
 Frame = +1

Query: 55  KRAPIRKKRKYELGRPAANTRLGPRRIHSVRSRGGNTEYRALRLDTGNFSWGSECSTRKT 234
           KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN ++RALRLD+GNFSWGSE  ++KT
Sbjct: 17  KRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKT 76

Query: 235 RIIDV 249
           RII V
Sbjct: 77  RIIQV 81



 Score = 75.4 bits (177), Expect = 7e-15
 Identities = 42/84 (50%), Positives = 52/84 (61%)
 Frame = +3

Query: 261 SNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKT 440
           SNNELVRT TL K+AIV +DA PFR WYE+HY + +G  KG K T          +S+  
Sbjct: 86  SNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATATP-----TPKSKHV 139

Query: 441 ARKYLARQRLAKVEGALEEQFHTG 512
            RK+ AR   +KV+ ALE QF  G
Sbjct: 140 QRKHSARLGDSKVDSALETQFAAG 163



 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 26/38 (68%), Positives = 31/38 (81%)
 Frame = +2

Query: 509 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 622
           GRL A V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 34  SEGPPAGKRAPIRKKRKYELGRPAANTRLGPRRIHSVRSRGGNTEYRALR 183
           S+G    K+    +KRK  L R A   RL    + S+ S+GG    +A +
Sbjct: 35  SKGVKTNKKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 275 QFIVRCIYTTSMIRVLRVEHSDPQEKLPVSRR 180
           QF +  + T S  +V R  H DP  KLP  RR
Sbjct: 190 QFNLEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 287 DPCQECNCCSRCNSIQAVVRVA 352
           D C++   CS+C+++Q VV+ A
Sbjct: 145 DHCKKMRRCSKCDAMQGVVKKA 166


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 343 YHCLNGVASTTTIAFLTRVFVRTNS 269
           ++C N V S T +  +  VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +3

Query: 321 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 497
           +TP     + H       KKG+K+  A++    ++R  + AR+  A +   K   ++E+
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIED 812


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 88   ELGRPAANTRLGPRRIHSVRSRGGNTEYRALRLDTGNFSWGSECSTRKTRI 240
            EL    +N  +  ++   + S    T YRA+ LDTG+     E +  K RI
Sbjct: 1108 ELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKPRI 1158


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 559 GATTLTWATRHASQQTPVWNCSSRAPS 479
           G+ T  W   ++  +TP WN  SR P+
Sbjct: 851 GSRTPAW---NSGNKTPAWNAGSRTPA 874


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,226
Number of Sequences: 5004
Number of extensions: 53760
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)