Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120599.Seq
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 94 8e-20
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 94 1e-19
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.21
11_01_0551 + 4361640-4363386,4363443-4363687 31 0.85
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 29 2.6
03_01_0350 - 2753217-2754152 29 3.4
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692... 28 6.0
08_01_0716 - 6352433-6352730,6352797-6352978 28 7.9
06_03_0451 - 20925100-20926734 28 7.9
05_01_0568 + 4973031-4973161,4973514-4974321,4974394-4974690 28 7.9
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 7.9
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 28 7.9
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 94.3 bits (224), Expect = 8e-20
Identities = 45/68 (66%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Frame = +1
Query: 52 GKRAPIRKKRKYELGRPAANTRLGPRR-IHSVRSRGGNTEYRALRLDTGNFSWGSECSTR 228
GK+ RKKRKYELGR ANT+L + + VR RGGN ++RALRLDTGN+SWGSE TR
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTR 75
Query: 229 KTRIIDVV 252
KTRI+DVV
Sbjct: 76 KTRILDVV 83
Score = 76.6 bits (180), Expect = 2e-14
Identities = 31/40 (77%), Positives = 38/40 (95%)
Frame = +2
Query: 509 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 628
GRLLAC++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 195 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 234
Score = 73.7 bits (173), Expect = 1e-13
Identities = 55/141 (39%), Positives = 76/141 (53%), Gaps = 5/141 (3%)
Frame = +3
Query: 6 MGISRDHWHKRRATGWETCAHTQEE--EV*VRASRCKHQARSSAYPLRSFTW-WKY*VPC 176
MGISRD HKRRATG + A ++ E+ + + K + + +R K+
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 177 AASGHR*LLLGIGMFNSQNPYH*CCVNASNNELVRTKTLVKNAIVVVDATPFRQWYESHY 356
+G+ G + NASNNELVRT+TLVK+AIV VDA PF+QWY +HY
Sbjct: 61 LDTGN--YSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHY 118
Query: 357 TLPLGRKKGAKLT--EAEEAI 413
+ +GRKK A +AE A+
Sbjct: 119 GVDIGRKKKAPAAKKDAEHAL 139
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 93.9 bits (223), Expect = 1e-19
Identities = 45/68 (66%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Frame = +1
Query: 52 GKRAPIRKKRKYELGRPAANTRLGPRR-IHSVRSRGGNTEYRALRLDTGNFSWGSECSTR 228
GK+ RKKRKYELGR ANT+L + + VR RGGN ++RALRLDTGN+SWGSE TR
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLDTGNYSWGSEAVTR 75
Query: 229 KTRIIDVV 252
KTRI+DVV
Sbjct: 76 KTRILDVV 83
Score = 86.6 bits (205), Expect = 2e-17
Identities = 66/180 (36%), Positives = 92/180 (51%), Gaps = 11/180 (6%)
Frame = +3
Query: 6 MGISRDHWHKRRATGWETCAHTQEE--EV*VRASRCKHQARSSAYPLRSFTW-WKY*VPC 176
MGISRD HKRRATG + A ++ E+ + + K + + +R K+
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 177 AASGHR*LLLGIGMFNSQNPYH*CCVNASNNELVRTKTLVKNAIVVVDATPFRQWYESHY 356
+G+ G + NASNNELVRT+TLVK+AIV VDA PF+QWY +HY
Sbjct: 61 LDTGN--YSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHY 118
Query: 357 TLPLGRKK--------GAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTG 512
+ +GRKK A+ E E A K+S RK RQ+ ++ +EEQF +G
Sbjct: 119 GVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSG 178
Score = 76.6 bits (180), Expect = 2e-14
Identities = 31/40 (77%), Positives = 38/40 (95%)
Frame = +2
Query: 509 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 628
GRLLAC++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 178 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = +1
Query: 49 AGKRAPIRKKRKYELGRPAANTRLGPRRIHSVRSR----GGNTEYRALRLDTGN-FSWGS 213
AG+ R+ +LG P+ +T+ PRR+ S+++R ++ A DTG F+WGS
Sbjct: 261 AGELFTWGSNREGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 375 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ-FHTGVCWLAWRVAQVSV 551
+ G+ T+A E+I KK+ + +K + + A V A EE+ G L WR+ S
Sbjct: 289 QNGSFTTQAAESIKEKKKRAEKKKKKKKKVKAASVAAAAEEEGGGGGAASLGWRLCNTSA 348
Query: 552 VAPMV 566
A +
Sbjct: 349 GADYI 353
>03_05_0936 -
28955486-28955683,28956320-28956424,28956550-28956693,
28957078-28957356,28957480-28957587,28958288-28958567,
28958724-28960029,28961301-28962342
Length = 1153
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +1
Query: 34 SEGPPAGKRAPIRKKRKYELGRPAANTRLGPRRIHSVRSRGGNTEYRALRLDTGNFSWGS 213
S GP +R K+ + G A + GPR SVRS + E+ +D G GS
Sbjct: 35 SNGPTVQRRVAEPKEDDEQDGSEAGSNA-GPRGAASVRSADSSREFIVKEIDVGGLPNGS 93
Query: 214 E 216
+
Sbjct: 94 D 94
>03_01_0350 - 2753217-2754152
Length = 311
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 7 WVSVGITGISEGPPAGKRAPIRKKRKYELGRPAANTR 117
WVS G + PPA KR P R+++ +G A +TR
Sbjct: 236 WVSHR-GGAAAAPPATKRTPQRRRKPESVGDEAIDTR 271
>03_02_0259 -
6920472-6920579,6920744-6921022,6921115-6921390,
6921473-6921691,6921795-6921963,6922248-6922422,
6922490-6922601,6923343-6923573
Length = 522
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -3
Query: 352 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDAFTQHQ*YGFCELNIPIP 206
C Y L GV S IA L+ + R SL+ F YG L +P+P
Sbjct: 426 CFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPVP 474
>08_01_0716 - 6352433-6352730,6352797-6352978
Length = 159
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 115 RLGPRRIHSVRSRGGNTEYRALRLDTGNFSWGSECSTRKT 234
RLG R+ RGG E+ +R D + CS+RKT
Sbjct: 14 RLGWGRVQQRNCRGGPCEHVGVRADEQATATAVVCSSRKT 53
>06_03_0451 - 20925100-20926734
Length = 544
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 518 ANARVELFF*STLNLSKTLPCQVFSCCLLTSLLVDN 411
AN + + S N S+ LP + C LL L++DN
Sbjct: 387 ANGELYGIYASNNNFSRNLPANLGDCVLLQELVLDN 422
>05_01_0568 + 4973031-4973161,4973514-4974321,4974394-4974690
Length = 411
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/37 (51%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 131 RRGPSLVFAAGRPNSYFLFLRMGARFPA--GGPSLMP 27
RRGP VFAAGR F R G F A GGP P
Sbjct: 117 RRGP--VFAAGRRGPLFAAGRRGPVFAAGRGGPVFAP 151
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 378 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 509
KG+KL + E + + R++ A R LA GAL + H+
Sbjct: 4 KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHS 47
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -3
Query: 352 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDAFTQHQ*YGFCELNIPIP 206
C Y L GV S IA L+ + R SL+ F YG L +P+P
Sbjct: 434 CFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPLP 482
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,293,310
Number of Sequences: 37544
Number of extensions: 394215
Number of successful extensions: 1272
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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