Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120599.Seq
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              119   2e-27
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           31   0.86 
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    29   2.6  
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  119 bits (286), Expect = 2e-27
 Identities = 57/86 (66%), Positives = 66/86 (76%)
 Frame = +3

Query: 255 NASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQ 434
           NASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+ I+NKKRS 
Sbjct: 68  NASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRSN 127

Query: 435 KTARKYLARQRLAKVEGALEEQFHTG 512
              RK  AR+  AKV   +EEQF TG
Sbjct: 128 HCTRKLEARKANAKVAPGMEEQFVTG 153



 Score =  102 bits (245), Expect = 2e-22
 Identities = 45/63 (71%), Positives = 53/63 (84%)
 Frame = +1

Query: 64  PIRKKRKYELGRPAANTRLGPRRIHSVRSRGGNTEYRALRLDTGNFSWGSECSTRKTRII 243
           P+R KRK+ELGRP ANT++G +RIH VR+RGGN ++RA RLDT NFSWGSE  TRK RII
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63

Query: 244 DVV 252
           DVV
Sbjct: 64  DVV 66



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 30/40 (75%), Positives = 37/40 (92%)
 Frame = +2

Query: 509 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 628
           GRL ACV+SRPGQ GR DGYILEGKELEFY++K+K+++AK
Sbjct: 153 GRLYACVSSRPGQSGRCDGYILEGKELEFYIKKLKARKAK 192


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 261 SNNELVRTKTLVKNAIVVVDATPFRQWYESH 353
           +N E +    +VK +IV VD  PF  W++ +
Sbjct: 83  ANKEHIERNVIVKGSIVQVDNKPFEDWFQEY 113


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 378 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALE 494
           + AKL + EE II K+ +  TA   +  ++  K++ ALE
Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALE 739


>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1792

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 599  DRTRVLCLLRCNHRRDHTDLGDSPRKPANARVELFF*STLNLSK 468
            D  RVL  L   H+  + + G+ PR+P+   ++ F   T NLS+
Sbjct: 985  DSDRVLSALLVKHKHQYQEAGNLPRRPSFYNLKTF---TPNLSR 1025


>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 420 KKRSQKTARKYLARQRLAKVEGALEE 497
           K+R QK  + Y  RQR  ++  +LEE
Sbjct: 15  KRRKQKATKSYAERQRRTRINKSLEE 40


>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3824

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 151  RGGNTEYRALRLDTGNFS 204
            +GGN EYR +  DTG FS
Sbjct: 1647 QGGNVEYRIVSPDTGKFS 1664


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,832,573
Number of Sequences: 59808
Number of extensions: 449285
Number of successful extensions: 1227
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)