Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120599.Seq
(678 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 144 3e-34
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 144 3e-34
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 144 3e-34
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 144 3e-34
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 133 6e-31
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 80 6e-15
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 30 8.7
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 30 8.7
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 30 8.7
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 30 8.7
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 144 bits (348), Expect = 3e-34
Identities = 86/179 (48%), Positives = 109/179 (60%), Gaps = 10/179 (5%)
Frame = +3
Query: 6 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRSFTWWKY*VPCAAS 185
MGISRD+WHKRR TG + + ++ + + + A + P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53
Query: 186 GHR*LLLGIGMFNSQNPYH*CCV----------NASNNELVRTKTLVKNAIVVVDATPFR 335
+R L L +G F+ + CC NASNNELVRTKTLVKN IV++D+TP+R
Sbjct: 54 KYRALRLDVGNFSWGSE---CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYR 110
Query: 336 QWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTG 512
QWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ LEEQF G
Sbjct: 111 QWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 125 bits (302), Expect = 1e-28
Identities = 56/67 (83%), Positives = 60/67 (89%)
Frame = +1
Query: 52 GKRAPIRKKRKYELGRPAANTRLGPRRIHSVRSRGGNTEYRALRLDTGNFSWGSECSTRK 231
GKR P KKRKYELGRPAANT++GPRRIH+VR RGGN +YRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 232 TRIIDVV 252
TRIIDVV
Sbjct: 76 TRIIDVV 82
Score = 80.2 bits (189), Expect = 6e-15
Identities = 33/40 (82%), Positives = 39/40 (97%)
Frame = +2
Query: 509 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 628
G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 169 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 144 bits (348), Expect = 3e-34
Identities = 86/179 (48%), Positives = 109/179 (60%), Gaps = 10/179 (5%)
Frame = +3
Query: 6 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRSFTWWKY*VPCAAS 185
MGISRD+WHKRR TG + + ++ + + + A + P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53
Query: 186 GHR*LLLGIGMFNSQNPYH*CCV----------NASNNELVRTKTLVKNAIVVVDATPFR 335
+R L L +G F+ + CC NASNNELVRTKTLVKN IV++D+TP+R
Sbjct: 54 KYRALRLDVGNFSWGSE---CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYR 110
Query: 336 QWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTG 512
QWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ LEEQF G
Sbjct: 111 QWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 125 bits (302), Expect = 1e-28
Identities = 56/67 (83%), Positives = 60/67 (89%)
Frame = +1
Query: 52 GKRAPIRKKRKYELGRPAANTRLGPRRIHSVRSRGGNTEYRALRLDTGNFSWGSECSTRK 231
GKR P KKRKYELGRPAANT++GPRRIH+VR RGGN +YRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 232 TRIIDVV 252
TRIIDVV
Sbjct: 76 TRIIDVV 82
Score = 80.2 bits (189), Expect = 6e-15
Identities = 33/40 (82%), Positives = 39/40 (97%)
Frame = +2
Query: 509 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 628
G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 169 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 144 bits (348), Expect = 3e-34
Identities = 86/179 (48%), Positives = 109/179 (60%), Gaps = 10/179 (5%)
Frame = +3
Query: 6 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRSFTWWKY*VPCAAS 185
MGISRD+WHKRR TG + + ++ + + + A + P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53
Query: 186 GHR*LLLGIGMFNSQNPYH*CCV----------NASNNELVRTKTLVKNAIVVVDATPFR 335
+R L L +G F+ + CC NASNNELVRTKTLVKN IV++D+TP+R
Sbjct: 54 KYRALRLDVGNFSWGSE---CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYR 110
Query: 336 QWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTG 512
QWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ LEEQF G
Sbjct: 111 QWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 125 bits (302), Expect = 1e-28
Identities = 56/67 (83%), Positives = 60/67 (89%)
Frame = +1
Query: 52 GKRAPIRKKRKYELGRPAANTRLGPRRIHSVRSRGGNTEYRALRLDTGNFSWGSECSTRK 231
GKR P KKRKYELGRPAANT++GPRRIH+VR RGGN +YRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 232 TRIIDVV 252
TRIIDVV
Sbjct: 76 TRIIDVV 82
Score = 80.2 bits (189), Expect = 6e-15
Identities = 33/40 (82%), Positives = 39/40 (97%)
Frame = +2
Query: 509 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 628
G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 169 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 144 bits (348), Expect = 3e-34
Identities = 86/179 (48%), Positives = 109/179 (60%), Gaps = 10/179 (5%)
Frame = +3
Query: 6 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRSFTWWKY*VPCAAS 185
MGISRD+WHKRR TG + + ++ + + + A + P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53
Query: 186 GHR*LLLGIGMFNSQNPYH*CCV----------NASNNELVRTKTLVKNAIVVVDATPFR 335
+R L L +G F+ + CC NASNNELVRTKTLVKN IV++D+TP+R
Sbjct: 54 KYRALRLDVGNFSWGSE---CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYR 110
Query: 336 QWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTG 512
QWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ LEEQF G
Sbjct: 111 QWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 125 bits (302), Expect = 1e-28
Identities = 56/67 (83%), Positives = 60/67 (89%)
Frame = +1
Query: 52 GKRAPIRKKRKYELGRPAANTRLGPRRIHSVRSRGGNTEYRALRLDTGNFSWGSECSTRK 231
GKR P KKRKYELGRPAANT++GPRRIH+VR RGGN +YRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 232 TRIIDVV 252
TRIIDVV
Sbjct: 76 TRIIDVV 82
Score = 80.2 bits (189), Expect = 6e-15
Identities = 33/40 (82%), Positives = 39/40 (97%)
Frame = +2
Query: 509 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 628
G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 169 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 133 bits (321), Expect = 6e-31
Identities = 61/86 (70%), Positives = 71/86 (82%)
Frame = +3
Query: 255 NASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQ 434
NASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+
Sbjct: 64 NASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSK 123
Query: 435 KTARKYLARQRLAKVEGALEEQFHTG 512
K +KY R++ AK+ LEEQF G
Sbjct: 124 KIQKKYDERKKNAKISSLLEEQFQQG 149
Score = 80.2 bits (189), Expect = 6e-15
Identities = 33/40 (82%), Positives = 39/40 (97%)
Frame = +2
Query: 509 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 628
G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 149 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 188
Score = 68.5 bits (160), Expect = 2e-11
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = +1
Query: 52 GKRAPIRKKRKYELGRPAANTRLGPRRIHSVRSRGGNT 165
GKR P KKRKYELGRPAANT++GPRRIH+VR RGG T
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGCT 53
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 80.2 bits (189), Expect = 6e-15
Identities = 33/40 (82%), Positives = 39/40 (97%)
Frame = +2
Query: 509 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 628
G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 41 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 80
Score = 46.8 bits (106), Expect = 7e-05
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +3
Query: 390 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTG 512
LT EE I+NKKRS+K +KY R++ AK+ LEEQF G
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 41
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 29.9 bits (64), Expect = 8.7
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +3
Query: 369 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQ 500
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 29.9 bits (64), Expect = 8.7
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +3
Query: 369 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQ 500
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 29.9 bits (64), Expect = 8.7
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +3
Query: 369 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQ 500
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 29.9 bits (64), Expect = 8.7
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +3
Query: 369 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQ 500
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,912,096
Number of Sequences: 237096
Number of extensions: 2171409
Number of successful extensions: 5331
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5318
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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