Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120599.Seq
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   128   5e-30
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical...    28   7.0  
Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  128 bits (308), Expect = 5e-30
 Identities = 79/171 (46%), Positives = 96/171 (56%), Gaps = 2/171 (1%)
 Frame = +3

Query: 6   MGISRDHWHKRRATG-WETCAHTQEE-EV*VRASRCKHQARSSAYPLRSFTWWKY*VPCA 179
           MGISRD WHKR  TG  +   H + + E+   A+  K  A             KY     
Sbjct: 1   MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60

Query: 180 ASGHR*LLLGIGMFNSQNPYH*CCVNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYT 359
            SG+            +        NA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY 
Sbjct: 61  DSGN--FSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYA 118

Query: 360 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTG 512
           LPL RKK AKL+E + AI+NKKRS  T +KY  RQ+ A V+  L EQF+TG
Sbjct: 119 LPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTG 169



 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 44/68 (64%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
 Frame = +1

Query: 52  GKRAPI-RKKRKYELGRPAANTRLGPRRIHSVRSRGGNTEYRALRLDTGNFSWGSECSTR 228
           G   P+  KKRK+ELGRPAANT++G  R+  VR+RGGN +YRALRLD+GNFSW SE +TR
Sbjct: 15  GATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSWASEQTTR 74

Query: 229 KTRIIDVV 252
           KTRI+D +
Sbjct: 75  KTRIVDTM 82



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 29/40 (72%), Positives = 37/40 (92%)
 Frame = +2

Query: 509 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 628
           GRLLA ++S PGQ G+A+GYILEGKEL+FYLRKI++K+AK
Sbjct: 169 GRLLARISSSPGQVGQANGYILEGKELDFYLRKIRAKKAK 208


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 520 QQTPVWNCSSRAPSTLARRCLA 455
           + T  W C +RAP+T+  RC A
Sbjct: 550 EHTHAWTCQTRAPTTIILRCPA 571


>U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical
           protein C37H5.5 protein.
          Length = 778

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +3

Query: 372 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 497
           +K G     A++  I K+++ KTA+KY  +++LA++E  L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463


>AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical
           protein C35E7.3 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 371 PKRQRVMRLVPLPEWSCIYYNNCILDKGLCTHQFIVRCIYTTSMIRVLRVE 219
           PK  +V+ L+PL E  C  +   I  K L  ++ I +  Y T   +  RV+
Sbjct: 44  PKSVKVIDLLPLYESDCDRHKKLIFCKNLMKNRQIFKYAYNTENGKFQRVQ 94


>Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical
           protein C44B9.4 protein.
          Length = 1150

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -3

Query: 562 IGATTLTWATRHASQQTPVWNCSSRAPSTLA 470
           I A T  WA   AS+Q P  + SS APS  A
Sbjct: 615 ICALTRKWAASGASKQAPPSSSSSEAPSVEA 645


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,011,473
Number of Sequences: 27780
Number of extensions: 319272
Number of successful extensions: 998
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)