Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120599.Seq
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...    94   9e-20
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...    93   2e-19
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   2.8  
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa...    29   3.7  
At3g60530.1 68416.m06770 zinc finger (GATA type) family protein ...    28   6.5  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score = 93.9 bits (223), Expect = 9e-20
 Identities = 42/68 (61%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
 Frame = +1

Query: 52  GKRAPIRKKRKYELGRPAANTRLGPRR-IHSVRSRGGNTEYRALRLDTGNFSWGSECSTR 228
           GK+   RKKRKYE+GR  ANT+L   + +  +R RGGN ++RALRLDTGN+SWGSE +TR
Sbjct: 16  GKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTR 75

Query: 229 KTRIIDVV 252
           KTR++DVV
Sbjct: 76  KTRVLDVV 83



 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 50/96 (52%), Positives = 61/96 (63%), Gaps = 10/96 (10%)
 Frame = +3

Query: 255 NASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGR-KKGAKLT-----EAEEAII 416
           NASNNELVRTKTLVK+AIV VDA PF+QWY SHY + LGR KK A  T     E EEA +
Sbjct: 85  NASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAV 144

Query: 417 ----NKKRSQKTARKYLARQRLAKVEGALEEQFHTG 512
                 K+S    RK  +RQ    ++  +E+QF +G
Sbjct: 145 AAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASG 180



 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 32/40 (80%), Positives = 38/40 (95%)
 Frame = +2

Query: 509 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 628
           GRLLAC++SRPGQCGRADGYILEGKELEFY++KI+ K+ K
Sbjct: 180 GRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGK 219



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = +3

Query: 6  MGISRDHWHKRRATG 50
          MGISRD  HKRRATG
Sbjct: 1  MGISRDSIHKRRATG 15


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 44/67 (65%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
 Frame = +1

Query: 52  GKRAPIRKKRKYELGRPAANTRLGPRR-IHSVRSRGGNTEYRALRLDTGNFSWGSECSTR 228
           GK+   RKKRKYELGR  ANT+L   + +  +R RGGN ++RALRLDTGNFSWGSE  TR
Sbjct: 16  GKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTR 75

Query: 229 KTRIIDV 249
           KTRI+DV
Sbjct: 76  KTRILDV 82



 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 44/86 (51%), Positives = 54/86 (62%)
 Frame = +3

Query: 255 NASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQ 434
           NASNNELVRT+TLVK+AIV VDA PF+Q Y  HY + +GRKK  +    EE     K+S 
Sbjct: 85  NASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEV----KKSN 140

Query: 435 KTARKYLARQRLAKVEGALEEQFHTG 512
              RK   RQ    ++  LEEQF +G
Sbjct: 141 HVQRKLEMRQEGRALDSHLEEQFSSG 166



 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 32/40 (80%), Positives = 38/40 (95%)
 Frame = +2

Query: 509 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 628
           GRLLAC+ASRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 166 GRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGK 205



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = +3

Query: 6  MGISRDHWHKRRATG 50
          MGISRD  HKRRATG
Sbjct: 1  MGISRDSIHKRRATG 15


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 273 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 401
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
          Length = 585

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -3

Query: 352 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDAFTQHQ*YGFCELNIPIP 206
           C  Y  L GV S+  +A L+ +  R  SL+  F     Y  C L +P P
Sbjct: 492 CFDYLSLGGVFSSGPVALLSGLNPRPLSLVLHFFAVAIYAVCRLMLPFP 540


>At3g60530.1 68416.m06770 zinc finger (GATA type) family protein
           identical to cDNA for GATA transcription factor 4
           GI:2959735
          Length = 240

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 535 TRHASQQTPVWNCSSRAPSTLARRCLAKY 449
           T  AS++TP W      P TL   C  +Y
Sbjct: 161 THCASEKTPQWRTGPLGPKTLCNACGVRY 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,266,435
Number of Sequences: 28952
Number of extensions: 296467
Number of successful extensions: 853
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)