Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120598.Seq
         (733 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    29   0.039
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    25   0.48 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   4.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.9  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    22   5.9  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   7.8  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 29.1 bits (62), Expect = 0.039
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 523 TCHCPYSFSGRYTFEY 476
           TCHCPY ++G+   EY
Sbjct: 84  TCHCPYGYTGKDCGEY 99



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 523 TCHCPYSFSG 494
           TC CP  FSG
Sbjct: 8   TCTCPLGFSG 17


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 516 IVLTVLVGVIPLNTINMDLNSLISKFAVPRVMVTLL 409
           ++L+ +VGV PLN +N +   L   F   +V+ T L
Sbjct: 32  LLLSQIVGVFPLNHLNEEPEKLHFTFKSWKVLYTSL 67


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 466 HVYCIQRYNAH*NCKDNGMLRFEVDSMI 549
           H Y  +   A+ N   NG L+F +D+++
Sbjct: 109 HYYNQKTLQANNNDASNGNLKFSIDNIL 136


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 578 RCPNERCANCANPTAL 625
           + P E CA C N T+L
Sbjct: 723 KVPGECCAICVNATSL 738


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -2

Query: 555 AHNHAVDFESQHAIVLTVLVGVIPLNTINMDLNSLISKFAVPRVMVTLLDVLAAFG 388
           A NH++  + +  I+  V++ V   N I+   N  +  FAV  +++     ++ FG
Sbjct: 5   AINHSL--KKRLKIITIVILVVATGNIIHTTSNKQLQFFAVEHLLIQCYIAVSIFG 58


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 323 GSNKVGTNSIFLGTVYD 373
           G+N++GT  IFL   +D
Sbjct: 492 GNNRMGTCRIFLAPQFD 508


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,653
Number of Sequences: 336
Number of extensions: 3845
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)