Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120596.Seq
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   5.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    26   7.3  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   7.3  
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    25   9.7  

>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 710 CEHWGKHDSSARLMCSKSVQ*TSPLLRYGLNSCFISFS-SSVWCTVGSVCST 558
           CE +G +   A +   K VQ     L+YGL + F+S + + ++  VG +C T
Sbjct: 155 CEIFGLY--VAFIYLEKGVQVLCDQLKYGLTNTFLSITIALLFLMVGWLCDT 204


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 481 DRPDYKLDAGLVSLNCGRADDD---QMRYVLQTEPTVHHTLLEKLMKQELRPYRNSGEV 648
           DR  Y+L+AGL  +  G+ + +    M Y +  +    + LL+ L+K  L   ++ G V
Sbjct: 461 DRVQYELEAGLQDIKSGKGNPEIVLNMDYAISYD---RYFLLKNLLKFVLHLIQSGGSV 516


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -3

Query: 483 ILNRFLSA--YSSVVAA*KWPSTGAELNFTVAWASWSRLNADAVHWGNTCS*NQFC 322
           +++R  S   Y  VV + +W      ++  +A ++W+RL+ + V +G   S  Q C
Sbjct: 112 VMSRLTSGPTYFGVVNSSEW-DIPKWIDMDIAHSNWNRLSREGVLYGGMKSYRQMC 166


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 80  GQVCGQGHCPQFKICKL*KGSTC 148
           G+ C    C   K CKL KGS C
Sbjct: 332 GEDCENNPCCDGKTCKLTKGSLC 354


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 460 RRKESVQDRPDYKLDAGLVSL 522
           RRK SV+D PD     GLV L
Sbjct: 25  RRKSSVEDDPDTSQTDGLVEL 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,491
Number of Sequences: 5004
Number of extensions: 62062
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)