Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120596.Seq
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0183 - 21406474-21406636,21407412-21407956 31 0.82
04_03_0147 - 11853940-11854128,11854933-11855013,11855501-118555... 30 1.9
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549... 29 4.4
04_04_1156 - 31319747-31320085,31320556-31320706,31320795-313210... 29 5.8
10_06_0161 + 11344712-11344877,11345870-11346084 28 7.7
04_04_1158 - 31342934-31343272,31343508-31343658,31343745-313439... 28 7.7
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 28 7.7
02_01_0398 - 2899311-2899454,2900679-2900807,2900927-2900998,290... 28 7.7
>09_06_0183 - 21406474-21406636,21407412-21407956
Length = 235
Score = 31.5 bits (68), Expect = 0.82
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 262 RQNRRYTAVHALQDAQRGGAAKLVLRTRVAPVHRVGVEPAPRRPS 396
R+N R + A Q +RG + R+ +HRVG E P RPS
Sbjct: 60 RENERSSGKKAAQRERRGAYRRP--RSTTVGIHRVGAEATPPRPS 102
>04_03_0147 -
11853940-11854128,11854933-11855013,11855501-11855584,
11855663-11855735,11855888-11855949,11856246-11856327,
11857643-11858262
Length = 396
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 280 TAVHALQDAQRGGAAKLVLRTRVAPVHRVGVEPAPRRPSDGKV*FRSRRG 429
TA L++ RGGA + R A +H G +P R +DG R R G
Sbjct: 89 TADRELEELARGGARERAERWAAAHLHGGGGDPRDRALADGNPDGRGRAG 138
>11_04_0430 +
17653553-17654285,17654305-17654627,17654795-17654921,
17655123-17655338,17655463-17655494
Length = 476
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 588 VVHGGLGLQHVPHLVVVGAAAIQRNQSRVKFVVWPILNRFLS 463
VV GGLG QH+PH +QRN+ K + ++ LS
Sbjct: 241 VVQGGLGFQHIPH------QPLQRNKKTTKKALVHVVGGALS 276
>04_04_1156 -
31319747-31320085,31320556-31320706,31320795-31321026,
31321121-31321331,31321646-31321764,31321835-31322032,
31322163-31322364,31322456-31322832,31322937-31323007,
31326264-31326329,31326414-31326479,31326761-31326835,
31326944-31327018,31327115-31327186,31327683-31327904,
31328012-31328083,31328425-31328496,31329410-31329481,
31329716-31329896,31332132-31332237
Length = 992
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +3
Query: 78 PVKF-VAKDIARSLKYVNYEKAVR-VHVDVKYKTTYEQACIN--ISKENRVKHGDPLYLS 245
P +F + IAR L Y++ E ++R VH D+K A +N IS K LY
Sbjct: 762 PARFGICLGIARGLAYLHEESSIRVVHRDIKASNVLLDAYLNPKISDFGLAK----LYDD 817
Query: 246 PQTYYSTK 269
+T+ STK
Sbjct: 818 KKTHVSTK 825
>10_06_0161 + 11344712-11344877,11345870-11346084
Length = 126
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = -1
Query: 392 GRLGAGSTPTRCTGATRVRKTNFAAPPRCASWSA*TAV 279
GR GAGS RC G +R+ ++AA A W+A TAV
Sbjct: 6 GRAGAGSGDWRCAG--WLRRADWAASR--AGWAALTAV 39
>04_04_1158 -
31342934-31343272,31343508-31343658,31343745-31343976,
31344173-31344284,31344572-31344690,31344772-31344936,
31345049-31345247,31345351-31345733,31345838-31345902,
31346003-31346047,31346402-31346467,31346707-31346778,
31346907-31346981,31347086-31347157,31347255-31347326,
31347954-31348022,31348109-31348180,31348280-31348351,
31348756-31348827,31349295-31349366,31349528-31349711,
31350082-31350220
Length = 948
Score = 28.3 bits (60), Expect = 7.7
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +3
Query: 78 PVKF-VAKDIARSLKYVNYEKAVRV-HVDVKYKTTYEQACIN--ISKENRVKHGDPLYLS 245
P +F + IAR L Y++ E ++RV H D+K A +N IS K LY
Sbjct: 718 PARFEICLGIARGLAYLHEESSIRVIHRDIKASNVLLDANLNPKISDFGLAK----LYDD 773
Query: 246 PQTYYSTK 269
+T+ STK
Sbjct: 774 KKTHVSTK 781
>04_04_1155 -
31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 28.3 bits (60), Expect = 7.7
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +3
Query: 78 PVKF-VAKDIARSLKYVNYEKAVR-VHVDVKYKTTYEQACIN--ISKENRVKHGDPLYLS 245
P +F + IAR L Y++ E ++R VH D+K A +N IS K LY
Sbjct: 691 PARFDICLGIARGLAYLHEESSIRVVHRDIKASNVLLDANLNPKISDFGLAK----LYDD 746
Query: 246 PQTYYSTK 269
+T+ STK
Sbjct: 747 KKTHVSTK 754
>02_01_0398 -
2899311-2899454,2900679-2900807,2900927-2900998,
2901667-2901790,2901835-2901882,2902145-2902197,
2902932-2903030,2903141-2903539
Length = 355
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 214 ALNTAIRCICHPKHITRQNRRYTAVHALQDAQRGGAAKLVLRTRVAPVHR 363
A + ++CI +P+ + R+ R+ AV ++ + + LRTR A VHR
Sbjct: 177 ACSVTVKCI-NPR-LVRRRLRHIAVSSIYIFPHPSVSAMFLRTRGASVHR 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,806,592
Number of Sequences: 37544
Number of extensions: 452942
Number of successful extensions: 1375
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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