Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120596.Seq
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032657-10|CAA21741.2|  343|Caenorhabditis elegans Hypothetical...    31   1.3  
U29244-5|AAC71090.1|  378|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z79754-2|CAB02091.1|  578|Caenorhabditis elegans Hypothetical pr...    28   9.1  
AL110482-6|CAB60339.1|  179|Caenorhabditis elegans Hypothetical ...    28   9.1  

>AL032657-10|CAA21741.2|  343|Caenorhabditis elegans Hypothetical
           protein Y47H9C.10 protein.
          Length = 343

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/79 (25%), Positives = 34/79 (43%)
 Frame = +1

Query: 493 YKLDAGLVSLNCGRADDDQMRYVLQTEPTVHHTLLEKLMKQELRPYRNSGEVYCTDFEHI 672
           YK+  G  +L C  + + +         TV HT+LEKL+  E    RN  +     F+  
Sbjct: 11  YKIGNGDANLTCKMSYNPKSPIFTDFPDTVVHTVLEKLLPAERMVVRNVSKKLRNLFDER 70

Query: 673 KRALESCLPQCSQN*SVQF 729
            R +++   Q     ++ F
Sbjct: 71  YRVIKNVYMQVQDEEAILF 89


>U29244-5|AAC71090.1|  378|Caenorhabditis elegans Hypothetical
           protein ZK1248.9 protein.
          Length = 378

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 165 YKTTYEQACINISKENRVKHGDPLYLSP 248
           Y+TT   ACIN  KE  V+ G  +Y +P
Sbjct: 16  YQTTANDACINRLKELNVESGAKIYTTP 43


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 282 SCSCAPRCTTRRSCKIGFTNTCCPSAP 362
           SC CAP C    SC +      CP+ P
Sbjct: 45  SCGCAPACPQAPSCPVCPPPQPCPAPP 71


>Z79754-2|CAB02091.1|  578|Caenorhabditis elegans Hypothetical
           protein F25H2.2 protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/14 (64%), Positives = 14/14 (100%)
 Frame = -1

Query: 194 NTCLLIRRFVFDID 153
           ++CLL+R+F+FDID
Sbjct: 353 SSCLLLRKFIFDID 366


>AL110482-6|CAB60339.1|  179|Caenorhabditis elegans Hypothetical
           protein Y39G8B.7 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 291 CAPRCTTRRSCKIGFTNTCCPSAPRRR*ACSKT 389
           C+P C +    K GF   CC S   R   C+KT
Sbjct: 120 CSPNCASW--AKRGFCTNCCYSCQDRERYCAKT 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,288,350
Number of Sequences: 27780
Number of extensions: 372448
Number of successful extensions: 1093
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)