Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120596.Seq
         (812 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28690.1 68417.m04099 expressed protein                             33   0.23 
At2g24130.1 68415.m02883 leucine-rich repeat transmembrane prote...    31   1.2  
At3g10060.1 68416.m01206 immunophilin, putative / FKBP-type pept...    29   2.8  
At5g13130.1 68418.m01504 hypothetical protein low similarity to ...    29   3.7  

>At4g28690.1 68417.m04099 expressed protein 
          Length = 448

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 538 DDDQMRYVLQTEPTVHHTLLEKLMKQELRPYRNSGEVYCTDFEHIKRA 681
           DDD    +L  +PT   T++E      +      GEV C DF H + A
Sbjct: 54  DDDDDCVILDFDPTAKETVIETCETDGVLVVGQKGEVACRDFPHPRHA 101


>At2g24130.1 68415.m02883 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 980

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = -2

Query: 514 PVPRQVCSLADLEQIPFGVQQRRGRIEMALDGSGIKLYRRLGVLEQAQRRRGALGQHVFV 335
           P+PR++C L+ LE++        G I M L         RLG+L+ ++          F 
Sbjct: 336 PIPRELCKLSKLERVYLSNNHLTGEIPMELGD-----IPRLGLLDVSRNNLSGSIPDSFG 390

Query: 334 KPILQLRRVVHLGAH 290
             + QLRR++  G H
Sbjct: 391 N-LSQLRRLLLYGNH 404


>At3g10060.1 68416.m01206 immunophilin, putative / FKBP-type
           peptidyl-prolyl cis-trans isomerase, putative
           Pfam:PF-254: FKBP-type peptidyl-prolyl cis-trans
           isomerases
          Length = 230

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 405 SLIPLPSRAISMRPRRCCTPKGICSRSARLQT 500
           S IP PSR    +P RC  P   C +  R +T
Sbjct: 17  SSIPFPSRKRQSKPYRCSLPSPGCEKVIRTET 48


>At5g13130.1 68418.m01504 hypothetical protein low similarity to
           microrchidia [Mus musculus] GI:5410255
          Length = 706

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 544 DQMRYVLQTEPTVHHTLLEKLMKQELRPYR 633
           D  R +L+ E   HH++L+ +MK E + Y+
Sbjct: 365 DNFRIILRGEDVEHHSVLDDMMKIEEKTYK 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,148,162
Number of Sequences: 28952
Number of extensions: 334167
Number of successful extensions: 901
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)