Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120595.Seq
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49800| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_40470| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=5.5)              28   9.5  
SB_1608| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_49800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +1

Query: 466 IFNYFIRILFYYFTTYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLIC 630
           IF     +L +Y+T + YI     + DRI     ++ T   GI+VI+G  F++ C
Sbjct: 58  IFWMTAAMLVFYYTDF-YIAVK--VDDRINRPWLYLGTALIGINVIVGLYFVVWC 109


>SB_40470| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=5.5)
          Length = 113

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 508 TYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRH 642
           T  +++ S T+A  + G+ FF          II  LFL  CYI+H
Sbjct: 44  TQSWLKRSGTVAVIVLGAVFF---------TIINVLFLRFCYIKH 79


>SB_1608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 508 TYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRH 642
           T  +++ S T+A  + G+ FF          II  LFL  CYI+H
Sbjct: 44  TQSWLKRSGTVAVIVLGAVFF---------TIINVLFLRFCYIKH 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,537,468
Number of Sequences: 59808
Number of extensions: 221271
Number of successful extensions: 371
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)