Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120594.Seq
(772 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P32651 Cluster: Structural glycoprotein gp41; n=34; Nuc... 111 2e-23
UniRef50_Q06692 Cluster: UPF0213 protein in VLF1-GP41 intergenic... 97 6e-19
UniRef50_Q06693 Cluster: Uncharacterized 12.5 kDa protein in VLF... 81 3e-14
UniRef50_Q06VJ4 Cluster: Putative uncharacterized protein; n=1; ... 52 2e-05
UniRef50_Q80LJ7 Cluster: Putative uncharacterized protein; n=1; ... 51 4e-05
UniRef50_Q0E564 Cluster: 13 kDa GIY-YIG-like endonuclease; n=1; ... 49 1e-04
UniRef50_Q0IL29 Cluster: ORF90; n=1; Leucania separata nuclear p... 48 3e-04
UniRef50_Q8V5S5 Cluster: ORF74; n=3; Nucleopolyhedrovirus|Rep: O... 46 8e-04
UniRef50_Q0N429 Cluster: Ac78-like protein; n=1; Clanis bilineat... 46 8e-04
UniRef50_Q6D994 Cluster: UPF0213 protein ECA0725; n=6; Enterobac... 46 8e-04
UniRef50_Q91BF0 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_Q8JMD7 Cluster: Putative uncharacterized protein; n=2; ... 46 0.001
UniRef50_A4CD43 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_Q9J856 Cluster: ORF81; n=2; Nucleopolyhedrovirus|Rep: O... 44 0.003
UniRef50_Q91FT0 Cluster: 242L; n=1; Invertebrate iridescent viru... 44 0.003
UniRef50_A0EYW6 Cluster: Gp41; n=1; Ecotropis obliqua NPV|Rep: G... 43 0.007
UniRef50_Q9PYW8 Cluster: ORF75; n=1; Xestia c-nigrum granuloviru... 43 0.010
UniRef50_Q80LN4 Cluster: Putative uncharacterized protein; n=1; ... 42 0.013
UniRef50_Q1JZM0 Cluster: Excinuclease ABC, C subunit-like; n=2; ... 42 0.013
UniRef50_A6BH73 Cluster: Putative uncharacterized protein; n=1; ... 42 0.017
UniRef50_Q461Z4 Cluster: Orf71; n=2; Nucleopolyhedrovirus|Rep: O... 42 0.022
UniRef50_Q6AJN1 Cluster: UPF0213 protein DP2720; n=3; cellular o... 41 0.030
UniRef50_A0EYZ1 Cluster: Endonuclease; n=1; Ecotropis obliqua NP... 40 0.068
UniRef50_A6VVA2 Cluster: Excinuclease ABC C subunit domain prote... 40 0.068
UniRef50_Q598P4 Cluster: ORF104; n=5; Nucleopolyhedrovirus|Rep: ... 40 0.091
UniRef50_A0EYW5 Cluster: Putative uncharacterized protein; n=1; ... 40 0.091
UniRef50_Q1PZH5 Cluster: Putative uncharacterized protein; n=1; ... 40 0.091
UniRef50_Q0F3H4 Cluster: Putative uncharacterized protein; n=1; ... 40 0.091
UniRef50_P67349 Cluster: UPF0213 protein yhbQ; n=22; Enterobacte... 40 0.091
UniRef50_Q9KLK4 Cluster: UPF0213 protein VC_A0739; n=29; Gammapr... 40 0.091
UniRef50_Q4UJM5 Cluster: Endo/excinuclease amino terminal domain... 38 0.21
UniRef50_Q9KGL3 Cluster: UPF0213 protein BH0048; n=11; Bacteria|... 38 0.21
UniRef50_A6F7V2 Cluster: Excinuclease ABC, C subunit, N-terminal... 38 0.28
UniRef50_A0YDW5 Cluster: Putative uncharacterized protein; n=1; ... 38 0.28
UniRef50_A7HV75 Cluster: Excinuclease ABC C subunit domain prote... 38 0.37
UniRef50_A0KPI3 Cluster: Endo/excinuclease domain protein; n=2; ... 38 0.37
UniRef50_Q8E0F5 Cluster: UPF0213 protein SAG0778; n=8; Streptoco... 38 0.37
UniRef50_Q0I0G8 Cluster: Excinuclease ABC, C subunit domain prot... 37 0.64
UniRef50_Q0HNZ9 Cluster: Excinuclease ABC, C subunit domain prot... 37 0.64
UniRef50_Q87GU3 Cluster: UPF0213 protein VPA1222; n=11; Vibriona... 36 0.84
UniRef50_Q725W6 Cluster: UPF0213 protein DVU_3309; n=2; Desulfov... 36 0.84
UniRef50_Q9YMP0 Cluster: LdOrf-87 peptide; n=1; Lymantria dispar... 36 1.1
UniRef50_Q2SQ04 Cluster: Predicted endonuclease containing a URI... 36 1.1
UniRef50_Q2G9Y5 Cluster: Excinuclease ABC, C subunit-like protei... 36 1.1
UniRef50_Q2G9S1 Cluster: Excinuclease ABC, C subunit-like protei... 36 1.1
UniRef50_Q9RHE8 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_A4LZS0 Cluster: Excinuclease ABC, C subunit domain prot... 36 1.1
UniRef50_A1CLS1 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_UPI0000E87E36 Cluster: hypothetical protein MB2181_0086... 36 1.5
UniRef50_Q6QXL5 Cluster: ORF95; n=9; Granulovirus|Rep: ORF95 - A... 36 1.5
UniRef50_A1S1V1 Cluster: Endonuclease containing a URI domain; n... 36 1.5
UniRef50_A5FFT3 Cluster: Excinuclease ABC, C subunit domain prot... 35 1.9
UniRef50_A4B511 Cluster: Hypothetical URI domain endonuclease; n... 35 1.9
UniRef50_Q30TF2 Cluster: Excinuclease ABC, C subunit-like; n=2; ... 35 2.6
UniRef50_Q21GK3 Cluster: Excinuclease ABC, C subunit-like protei... 35 2.6
UniRef50_Q1QV31 Cluster: Excinuclease ABC, C subunit-like protei... 35 2.6
UniRef50_Q0LV83 Cluster: Excinuclease ABC, C subunit-like; n=1; ... 35 2.6
UniRef50_Q88VJ1 Cluster: UPF0213 protein lp_2058; n=6; Lactobaci... 35 2.6
UniRef50_Q2SR54 Cluster: Cation-transporting ATPase; n=2; Mycopl... 34 3.4
UniRef50_Q1LH87 Cluster: Excinuclease ABC, C subunit-like protei... 34 3.4
UniRef50_Q089V4 Cluster: Excinuclease ABC, C subunit domain prot... 34 3.4
UniRef50_A4J4G2 Cluster: Excinuclease ABC, C subunit domain prot... 34 3.4
UniRef50_A1RI21 Cluster: Excinuclease ABC, C subunit domain prot... 34 3.4
UniRef50_Q5QZJ7 Cluster: Predicted endonuclease containing a URI... 34 4.5
UniRef50_Q07QY7 Cluster: Excinuclease ABC, C subunit domain prot... 34 4.5
UniRef50_Q3IE32 Cluster: Putative uncharacterized protein; n=2; ... 33 5.9
UniRef50_A1FNL2 Cluster: Excinuclease ABC, C subunit-like; n=4; ... 33 5.9
UniRef50_Q51440 Cluster: UPF0213 protein in ldhD 5'region; n=3; ... 33 5.9
UniRef50_Q3CK93 Cluster: Excinuclease ABC, C subunit, N-terminal... 33 7.9
UniRef50_A6DRF3 Cluster: Putative helicase; n=1; Lentisphaera ar... 33 7.9
UniRef50_A5WDC9 Cluster: Sec-independent protein translocase, Ta... 33 7.9
>UniRef50_P32651 Cluster: Structural glycoprotein gp41; n=34;
Nucleopolyhedrovirus|Rep: Structural glycoprotein gp41 -
Autographa californica nuclear polyhedrosis virus
(AcMNPV)
Length = 409
Score = 111 bits (267), Expect = 2e-23
Identities = 52/66 (78%), Positives = 56/66 (84%)
Frame = +2
Query: 2 TAANAVNSPAAHLTKNACKDSLTELAFQNETLRRFIFQQINYNKDXXXXXXXXXPNVTRP 181
+AANAVNSPAAHLTK+AC++SLTELAFQNETLRRFIFQQINYNKD PN TRP
Sbjct: 343 SAANAVNSPAAHLTKSACQESLTELAFQNETLRRFIFQQINYNKDANAIIAAAAPNATRP 402
Query: 182 NTKGRT 199
NTKGRT
Sbjct: 403 NTKGRT 408
>UniRef50_Q06692 Cluster: UPF0213 protein in VLF1-GP41 intergenic
region; n=12; Nucleopolyhedrovirus|Rep: UPF0213 protein
in VLF1-GP41 intergenic region - Autographa californica
nuclear polyhedrosis virus (AcMNPV)
Length = 104
Score = 96.7 bits (230), Expect = 6e-19
Identities = 44/44 (100%), Positives = 44/44 (100%)
Frame = +3
Query: 255 RQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHSA 386
RQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHSA
Sbjct: 17 RQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHSA 60
Score = 85.0 bits (201), Expect = 2e-15
Identities = 39/40 (97%), Positives = 39/40 (97%)
Frame = +2
Query: 389 AYDYKTAARMEYNLKRKCSKYFKLRLIKAKPLLLHKFLLA 508
AYDY TAARMEYNLKRKCSKYFKLRLIKAKPLLLHKFLLA
Sbjct: 62 AYDYNTAARMEYNLKRKCSKYFKLRLIKAKPLLLHKFLLA 101
Score = 39.9 bits (89), Expect = 0.068
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1
Query: 208 MATTLYTNKVWCVYIL 255
MATTLYTNKVWCVYIL
Sbjct: 1 MATTLYTNKVWCVYIL 16
>UniRef50_Q06693 Cluster: Uncharacterized 12.5 kDa protein in
VLF1-GP41 intergenic region; n=12;
Nucleopolyhedrovirus|Rep: Uncharacterized 12.5 kDa
protein in VLF1-GP41 intergenic region - Autographa
californica nuclear polyhedrosis virus (AcMNPV)
Length = 109
Score = 81.0 bits (191), Expect = 3e-14
Identities = 41/45 (91%), Positives = 44/45 (97%)
Frame = +1
Query: 628 FSEPVYKMPIDDMMVGYNNTTSNVSAGIIILISVVAFIALFLLLY 762
FSEPV+KMPI+DM VGY+NTTSNVSAGIIILISVVAFIALFLLLY
Sbjct: 36 FSEPVHKMPINDM-VGYDNTTSNVSAGIIILISVVAFIALFLLLY 79
Score = 77.4 bits (182), Expect = 4e-13
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +3
Query: 522 MNLDVPYYRLGNHEKVEYIPLKLALNDDITSEPQQF 629
MNLDVPYYRLGNHEKVEYIPLKLALNDD SEPQQF
Sbjct: 1 MNLDVPYYRLGNHEKVEYIPLKLALNDDTASEPQQF 36
>UniRef50_Q06VJ4 Cluster: Putative uncharacterized protein; n=1;
Trichoplusia ni ascovirus 2c|Rep: Putative
uncharacterized protein - Trichoplusia ni ascovirus 2c
Length = 135
Score = 52.0 bits (119), Expect = 2e-05
Identities = 24/43 (55%), Positives = 30/43 (69%)
Frame = +3
Query: 255 RQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHS 383
R G +YTGITSN+++R KQH + GAKCLR+ T L VY S
Sbjct: 22 RMPCGSIYTGITSNVDKRFKQHCDGTGAKCLRSKTPLVKVYSS 64
Score = 38.7 bits (86), Expect = 0.16
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +2
Query: 392 YDYKTAARMEYNLKRKCSKYFKLRLIKAKPLLLHKFLLAISCKHEFGRAILSV 550
YD+KT AR+EY +K + +K FK +LI +P L ++ K E + ++ +
Sbjct: 68 YDHKTVARIEYEIKHRRNKSFKEKLIIDQPADLFGYIYPSLAKEEVEKKLILI 120
>UniRef50_Q80LJ7 Cluster: Putative uncharacterized protein; n=1;
Adoxophyes honmai NPV|Rep: Putative uncharacterized
protein - Adoxophyes honmai nucleopolyhedrovirus
Length = 96
Score = 50.8 bits (116), Expect = 4e-05
Identities = 23/50 (46%), Positives = 31/50 (62%)
Frame = +3
Query: 255 RQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHSARRTTTK 404
R NG+LYTG+++ + R + H N +GAKCLR T L LVY + T K
Sbjct: 13 RMPNGRLYTGMSNRVLNRFRDHCNGRGAKCLRGKTPLALVYKTESCLTRK 62
>UniRef50_Q0E564 Cluster: 13 kDa GIY-YIG-like endonuclease; n=1;
Spodoptera frugiperda ascovirus 1a|Rep: 13 kDa
GIY-YIG-like endonuclease - Spodoptera frugiperda
ascovirus 1a
Length = 112
Score = 49.2 bits (112), Expect = 1e-04
Identities = 20/40 (50%), Positives = 28/40 (70%)
Frame = +3
Query: 264 NGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHS 383
NG +YTG + ++ RR K H + +GAKCLR A LRL++ S
Sbjct: 16 NGNIYTGASKDVERRFKMHCSGRGAKCLRGAQGLRLIWTS 55
>UniRef50_Q0IL29 Cluster: ORF90; n=1; Leucania separata nuclear
polyhedrosis virus|Rep: ORF90 - Leucania separata
nuclear polyhedrosis virus (LsNPV)
Length = 100
Score = 47.6 bits (108), Expect = 3e-04
Identities = 19/27 (70%), Positives = 24/27 (88%)
Frame = +3
Query: 522 MNLDVPYYRLGNHEKVEYIPLKLALND 602
MNLD+PY RLG +KV+YIP+KLA+ND
Sbjct: 1 MNLDIPYDRLGTSDKVDYIPMKLAVND 27
>UniRef50_Q8V5S5 Cluster: ORF74; n=3; Nucleopolyhedrovirus|Rep:
ORF74 - Helicoverpa zea SNPV
Length = 110
Score = 46.4 bits (105), Expect = 8e-04
Identities = 19/27 (70%), Positives = 25/27 (92%)
Frame = +3
Query: 522 MNLDVPYYRLGNHEKVEYIPLKLALND 602
MNLD+PY RLG ++KV+YIPLKLA++D
Sbjct: 1 MNLDIPYDRLGVNDKVDYIPLKLAISD 27
>UniRef50_Q0N429 Cluster: Ac78-like protein; n=1; Clanis bilineata
nucleopolyhedrosis virus|Rep: Ac78-like protein - Clanis
bilineata nucleopolyhedrosis virus
Length = 114
Score = 46.4 bits (105), Expect = 8e-04
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +3
Query: 522 MNLDVPYYRLGNHEKVEYIPLKLALND 602
MNL++PY RL + KVEYIPLKLALND
Sbjct: 1 MNLEIPYERLSDKTKVEYIPLKLALND 27
>UniRef50_Q6D994 Cluster: UPF0213 protein ECA0725; n=6;
Enterobacteriaceae|Rep: UPF0213 protein ECA0725 -
Erwinia carotovora subsp. atroseptica (Pectobacterium
atrosepticum)
Length = 103
Score = 46.4 bits (105), Expect = 8e-04
Identities = 24/74 (32%), Positives = 36/74 (48%)
Frame = +3
Query: 267 GKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHSARRTTTKPPPAWNTILSVNAA 446
G LYTGIT++++RR+ QH +GAK LR L LV+H + I ++ +
Sbjct: 20 GALYTGITTDVSRRMNQHQAGKGAKALRGKGELTLVFHCLAGDRSNALKLEYRIKQLSKS 79
Query: 447 SISNCVSSKPNHFC 488
V +P C
Sbjct: 80 QKERLVQDQPQALC 93
>UniRef50_Q91BF0 Cluster: Putative uncharacterized protein; n=1;
Spodoptera litura NPV|Rep: Putative uncharacterized
protein - Spodoptera litura multicapsid
nucleopolyhedrovirus (SpltMNPV)
Length = 120
Score = 46.0 bits (104), Expect = 0.001
Identities = 23/33 (69%), Positives = 27/33 (81%), Gaps = 1/33 (3%)
Frame = +3
Query: 522 MNLDVPYYRLG-NHEKVEYIPLKLALNDDITSE 617
MNLDVPY RLG +EKVEYIPLKLA+N + S+
Sbjct: 1 MNLDVPYDRLGITNEKVEYIPLKLAINVNSDSD 33
>UniRef50_Q8JMD7 Cluster: Putative uncharacterized protein; n=2;
Nucleopolyhedrovirus|Rep: Putative uncharacterized
protein - Mamestra configurata NPV-B
Length = 98
Score = 46.0 bits (104), Expect = 0.001
Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +3
Query: 255 RQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATN-LRLVY 377
R LYTGIT N++RR QH+ +GAKCLR + N L+L Y
Sbjct: 8 RAKGDMLYTGITKNISRRFYQHNKGRGAKCLRASKNALQLAY 49
>UniRef50_A4CD43 Cluster: Putative uncharacterized protein; n=1;
Pseudoalteromonas tunicata D2|Rep: Putative
uncharacterized protein - Pseudoalteromonas tunicata D2
Length = 105
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +3
Query: 267 GKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVY 377
G YTGIT+++ RR KQH + +GAK LR T L+LV+
Sbjct: 14 GHWYTGITTDVERRFKQHQSGKGAKNLRGKTPLKLVF 50
>UniRef50_Q9J856 Cluster: ORF81; n=2; Nucleopolyhedrovirus|Rep:
ORF81 - Spodoptera exigua MNPV
Length = 127
Score = 44.4 bits (100), Expect = 0.003
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +3
Query: 522 MNLDVPYYRLGNHEKVEYIPLKLALND 602
M+LDVPY RLG KV+YIPLKLAL D
Sbjct: 1 MSLDVPYERLGTATKVDYIPLKLALTD 27
>UniRef50_Q91FT0 Cluster: 242L; n=1; Invertebrate iridescent virus
6|Rep: 242L - Chilo iridescent virus (CIV) (Insect
iridescent virus type 6)
Length = 99
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +3
Query: 264 NGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHS 383
NG +YTGI++N+ +R H N +GAKCLR L+L + S
Sbjct: 16 NGNIYTGISNNVLKRFDTHCNGKGAKCLRGKGPLKLSWFS 55
>UniRef50_A0EYW6 Cluster: Gp41; n=1; Ecotropis obliqua NPV|Rep: Gp41
- Ecotropis obliqua NPV
Length = 338
Score = 43.2 bits (97), Expect = 0.007
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = +2
Query: 62 SLTELAFQNETLRRFIFQQINYNKD 136
SLTE+AFQNE LRRFIFQQ++Y +
Sbjct: 308 SLTEMAFQNEALRRFIFQQLSYKNN 332
>UniRef50_Q9PYW8 Cluster: ORF75; n=1; Xestia c-nigrum
granulovirus|Rep: ORF75 - Xestia c-nigrum granulosis
virus (XnGV) (Xestia c-nigrumgranulovirus)
Length = 97
Score = 42.7 bits (96), Expect = 0.010
Identities = 20/42 (47%), Positives = 29/42 (69%)
Frame = +3
Query: 273 LYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHSARRTT 398
LYTG++ +++RR + H + +GAK LRN L+LVY S R T
Sbjct: 20 LYTGVSVDVDRRFRLHCSGRGAKFLRNKQPLQLVYRSKCRFT 61
>UniRef50_Q80LN4 Cluster: Putative uncharacterized protein; n=1;
Adoxophyes honmai NPV|Rep: Putative uncharacterized
protein - Adoxophyes honmai nucleopolyhedrovirus
Length = 107
Score = 42.3 bits (95), Expect = 0.013
Identities = 17/27 (62%), Positives = 23/27 (85%)
Frame = +3
Query: 522 MNLDVPYYRLGNHEKVEYIPLKLALND 602
MN D+PY +L ++ KV+YIPLKLAL+D
Sbjct: 1 MNFDIPYDKLSSNAKVDYIPLKLALSD 27
>UniRef50_Q1JZM0 Cluster: Excinuclease ABC, C subunit-like; n=2;
Bacteria|Rep: Excinuclease ABC, C subunit-like -
Desulfuromonas acetoxidans DSM 684
Length = 86
Score = 42.3 bits (95), Expect = 0.013
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = +3
Query: 258 QDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHSA 386
+DN LYTGIT++L RR QH++ +GA+ R + +VYH +
Sbjct: 14 RDNS-LYTGITTDLERRFAQHASGRGARYFRGHEPIEVVYHES 55
>UniRef50_A6BH73 Cluster: Putative uncharacterized protein; n=1;
Dorea longicatena DSM 13814|Rep: Putative
uncharacterized protein - Dorea longicatena DSM 13814
Length = 114
Score = 41.9 bits (94), Expect = 0.017
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +3
Query: 273 LYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHSARRT 395
LYTG T++LN+RIK H++ +GAK + ++LVY+ T
Sbjct: 14 LYTGWTNDLNKRIKAHNSGKGAKYTKTRRPVKLVYYEEHET 54
>UniRef50_Q461Z4 Cluster: Orf71; n=2; Nucleopolyhedrovirus|Rep:
Orf71 - Trichoplusia ni SNPV
Length = 125
Score = 41.5 bits (93), Expect = 0.022
Identities = 19/28 (67%), Positives = 24/28 (85%), Gaps = 1/28 (3%)
Frame = +3
Query: 522 MNLDVPYYRLG-NHEKVEYIPLKLALND 602
M+L+VPY R+ N +KVEYIPLKLA+ND
Sbjct: 1 MSLEVPYERMSLNQKKVEYIPLKLAVND 28
>UniRef50_Q6AJN1 Cluster: UPF0213 protein DP2720; n=3; cellular
organisms|Rep: UPF0213 protein DP2720 - Desulfotalea
psychrophila
Length = 110
Score = 41.1 bits (92), Expect = 0.030
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 264 NGKLYTGITSNLNRRIKQH-SNKQGAKCLRNATNLRLVYHSARRTTTKPPPAWNTILSVN 440
+G LYTGIT+N+ RRI +H S+ +GA+ R+ + LVY R ++ I ++
Sbjct: 23 DGTLYTGITTNIARRITEHNSSAKGARYTRSRRPVMLVYRETCRDRSEASKREYAIKQLS 82
Query: 441 AASISNCVSSKPNHFCCINF 500
V + F I F
Sbjct: 83 PTRKRTLVKASEKGFSAIYF 102
>UniRef50_A0EYZ1 Cluster: Endonuclease; n=1; Ecotropis obliqua
NPV|Rep: Endonuclease - Ecotropis obliqua NPV
Length = 109
Score = 39.9 bits (89), Expect = 0.068
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +3
Query: 261 DNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHS 383
++G+LY GI S++ +R +QH G+K LRN + LVY S
Sbjct: 15 EHGQLYAGIASDVKKRFRQHYRSAGSKFLRN-KQINLVYFS 54
>UniRef50_A6VVA2 Cluster: Excinuclease ABC C subunit domain protein;
n=1; Marinomonas sp. MWYL1|Rep: Excinuclease ABC C
subunit domain protein - Marinomonas sp. MWYL1
Length = 112
Score = 39.9 bits (89), Expect = 0.068
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Frame = +3
Query: 225 HQQGVVRVHSRQDNGKLYTGITSNLNRRIKQHS--NKQGAKCLRNATNLRLVYHSA 386
H+ + + +R + LYTGI+++++RR K+HS +K+GA+ L+ L LV+H +
Sbjct: 14 HEWSLYMIKTRLNT--LYTGISTDVDRRFKEHSGVSKRGARYLKGKGPLELVWHQS 67
>UniRef50_Q598P4 Cluster: ORF104; n=5; Nucleopolyhedrovirus|Rep:
ORF104 - Mamestra configurata NPV-B
Length = 151
Score = 39.5 bits (88), Expect = 0.091
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = +3
Query: 522 MNLDVPYYRLGNHEKVEYIPLKLALND 602
M+LD+PY RL V+YIPLKLALND
Sbjct: 40 MSLDIPYERLSPTLTVKYIPLKLALND 66
>UniRef50_A0EYW5 Cluster: Putative uncharacterized protein; n=1;
Ecotropis obliqua NPV|Rep: Putative uncharacterized
protein - Ecotropis obliqua NPV
Length = 110
Score = 39.5 bits (88), Expect = 0.091
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +3
Query: 522 MNLDVPYYRLGNHEKVEYIPLKLALND 602
M+ ++PY RLG V+YIPLKLALND
Sbjct: 1 MSFEIPYERLGVKNIVDYIPLKLALND 27
>UniRef50_Q1PZH5 Cluster: Putative uncharacterized protein; n=1;
Candidatus Kuenenia stuttgartiensis|Rep: Putative
uncharacterized protein - Candidatus Kuenenia
stuttgartiensis
Length = 102
Score = 39.5 bits (88), Expect = 0.091
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Frame = +3
Query: 255 RQDNGKLYTGITSNLNRRIKQHS--NKQGAKCLRNATNLRLV 374
R +G+LYTGIT+++ RR +HS +K+G+K LR L LV
Sbjct: 23 RCKHGRLYTGITTDVERRFAEHSSDDKKGSKYLRGKAPLTLV 64
>UniRef50_Q0F3H4 Cluster: Putative uncharacterized protein; n=1;
Mariprofundus ferrooxydans PV-1|Rep: Putative
uncharacterized protein - Mariprofundus ferrooxydans
PV-1
Length = 97
Score = 39.5 bits (88), Expect = 0.091
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +3
Query: 255 RQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVY 377
R G+LYTGIT+++ RR+ +H + +GAK LR L L +
Sbjct: 18 RCKGGQLYTGITTHVERRLAEHQSGKGAKFLRGKGPLVLAF 58
>UniRef50_P67349 Cluster: UPF0213 protein yhbQ; n=22;
Enterobacteriaceae|Rep: UPF0213 protein yhbQ -
Salmonella typhimurium
Length = 100
Score = 39.5 bits (88), Expect = 0.091
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +3
Query: 255 RQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVY 377
R + LYTGIT+++ RR +QH +GAK LR L L +
Sbjct: 10 RTADNALYTGITTDVARRYRQHQTGKGAKALRGKGELTLAF 50
>UniRef50_Q9KLK4 Cluster: UPF0213 protein VC_A0739; n=29;
Gammaproteobacteria|Rep: UPF0213 protein VC_A0739 -
Vibrio cholerae
Length = 101
Score = 39.5 bits (88), Expect = 0.091
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +3
Query: 264 NGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVY 377
N LY GIT++++RR QH +GAK LR L LV+
Sbjct: 20 NNALYCGITTDVSRRFAQHQKGRGAKALRGKGPLELVW 57
>UniRef50_Q4UJM5 Cluster: Endo/excinuclease amino terminal domain
protein; n=17; Proteobacteria|Rep: Endo/excinuclease
amino terminal domain protein - Rickettsia felis
(Rickettsia azadi)
Length = 144
Score = 38.3 bits (85), Expect = 0.21
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +3
Query: 228 QQGVVRVHSRQDNGKLYTGITSNLNRRIKQHSN 326
+Q +V + + + NG LYTG+TSNL +RI +H N
Sbjct: 50 KQPIVYIVTNKKNGILYTGVTSNLIKRIYEHKN 82
>UniRef50_Q9KGL3 Cluster: UPF0213 protein BH0048; n=11;
Bacteria|Rep: UPF0213 protein BH0048 - Bacillus
halodurans
Length = 94
Score = 38.3 bits (85), Expect = 0.21
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +3
Query: 264 NGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLV 374
+G YTG T++++RRIK+H++ +GAK R RLV
Sbjct: 12 DGSWYTGYTTDVDRRIKKHASGKGAKYTRGRGPFRLV 48
>UniRef50_A6F7V2 Cluster: Excinuclease ABC, C subunit, N-terminal;
n=1; Moritella sp. PE36|Rep: Excinuclease ABC, C
subunit, N-terminal - Moritella sp. PE36
Length = 87
Score = 37.9 bits (84), Expect = 0.28
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +3
Query: 246 VHSRQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVY 377
V+ + + LY GIT+++ RR +QH GAK R A +R+ Y
Sbjct: 9 VYLIETDAGLYCGITTDMERRYQQHCKGTGAKFFRRAKPIRIAY 52
>UniRef50_A0YDW5 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2143
Length = 88
Score = 37.9 bits (84), Expect = 0.28
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Frame = +3
Query: 261 DNGKLYTGITSNLNRRIKQH---SNKQGAKCLRNATNLRLVY 377
++GKLYTGIT++++RR +H +N +GAK R+ +VY
Sbjct: 15 ESGKLYTGITTDVDRRFHEHFDKNNSRGAKFFRSDPAKAVVY 56
>UniRef50_A7HV75 Cluster: Excinuclease ABC C subunit domain protein;
n=1; Parvibaculum lavamentivorans DS-1|Rep: Excinuclease
ABC C subunit domain protein - Parvibaculum
lavamentivorans DS-1
Length = 96
Score = 37.5 bits (83), Expect = 0.37
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +3
Query: 267 GKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHSA 386
G+LYTGIT ++ R K H++ +GAK R+ RLV+ A
Sbjct: 19 GRLYTGITVDVPMRYKAHASGKGAKFTRSYRPERLVFQQA 58
>UniRef50_A0KPI3 Cluster: Endo/excinuclease domain protein; n=2;
Aeromonas|Rep: Endo/excinuclease domain protein -
Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966
/ NCIB 9240)
Length = 136
Score = 37.5 bits (83), Expect = 0.37
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +3
Query: 255 RQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHSA 386
R +G LYTGI+++ RR++QH + +G++ LR L L + A
Sbjct: 25 RTASGLLYTGISTDPLRRLRQHQSGKGSRALRGKGPLTLAWQQA 68
>UniRef50_Q8E0F5 Cluster: UPF0213 protein SAG0778; n=8;
Streptococcus agalactiae|Rep: UPF0213 protein SAG0778 -
Streptococcus agalactiae serotype V
Length = 88
Score = 37.5 bits (83), Expect = 0.37
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +3
Query: 264 NGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHSA 386
+G LYTG T+++ RR+ H+ +GAK R ++L+Y A
Sbjct: 15 DGTLYTGYTTDVKRRLNTHNTGKGAKYTRARLPVKLLYSEA 55
>UniRef50_Q0I0G8 Cluster: Excinuclease ABC, C subunit domain
protein; n=12; Shewanella|Rep: Excinuclease ABC, C
subunit domain protein - Shewanella sp. (strain MR-7)
Length = 141
Score = 36.7 bits (81), Expect = 0.64
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +3
Query: 264 NGKLYTGITSNLNRRIKQH--SNKQGAKCLRNATNLRLVY 377
NG LYTGIT+++ RR +H S+ + AK LR L L+Y
Sbjct: 66 NGHLYTGITTDVARRFNEHQSSSPKAAKYLRGKGPLTLMY 105
>UniRef50_Q0HNZ9 Cluster: Excinuclease ABC, C subunit domain
protein; n=3; Shewanella|Rep: Excinuclease ABC, C
subunit domain protein - Shewanella sp. (strain MR-4)
Length = 139
Score = 36.7 bits (81), Expect = 0.64
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +3
Query: 264 NGKLYTGITSNLNRRIKQH--SNKQGAKCLRNATNLRLVY 377
NG LYTGIT+++ RR +H S+ + AK LR L L+Y
Sbjct: 66 NGHLYTGITTDVARRFNEHQSSSPKAAKYLRGKGPLTLMY 105
>UniRef50_Q87GU3 Cluster: UPF0213 protein VPA1222; n=11;
Vibrionales|Rep: UPF0213 protein VPA1222 - Vibrio
parahaemolyticus
Length = 106
Score = 36.3 bits (80), Expect = 0.84
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +3
Query: 216 DSVHQQGVVRVHSRQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHSA 386
+SV Q V + R + LY G+T+++ RR KQH +GAK L+ L L + ++
Sbjct: 3 ESVEQHWSVYL-IRNNRNALYCGVTNDIERRFKQHQLGKGAKALKGKGPLVLEWSTS 58
>UniRef50_Q725W6 Cluster: UPF0213 protein DVU_3309; n=2;
Desulfovibrio vulgaris subsp. vulgaris|Rep: UPF0213
protein DVU_3309 - Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB8303)
Length = 110
Score = 36.3 bits (80), Expect = 0.84
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 264 NGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHS 383
+G LY G+T+N+ RR+ QH +GA+ R L+ H+
Sbjct: 19 DGTLYCGVTNNIERRLTQHHRGRGARYTRGRAPFILLGHA 58
>UniRef50_Q9YMP0 Cluster: LdOrf-87 peptide; n=1; Lymantria dispar
MNPV|Rep: LdOrf-87 peptide - Lymantria dispar
multicapsid nuclear polyhedrosis virus (LdMNPV)
Length = 113
Score = 35.9 bits (79), Expect = 1.1
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 525 NLDVPYYRLGNH-EKVEYIPLKLALNDD 605
+LDVPY +L KV YIPLKLAL DD
Sbjct: 9 SLDVPYEQLNERPSKVMYIPLKLALRDD 36
>UniRef50_Q2SQ04 Cluster: Predicted endonuclease containing a URI
domain; n=1; Hahella chejuensis KCTC 2396|Rep: Predicted
endonuclease containing a URI domain - Hahella
chejuensis (strain KCTC 2396)
Length = 105
Score = 35.9 bits (79), Expect = 1.1
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 264 NGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVY 377
+ LYTGIT+N +R + H GAK R +RL+Y
Sbjct: 20 DNSLYTGITNNPAKRFRDHLQGSGAKYFRGRKPVRLLY 57
>UniRef50_Q2G9Y5 Cluster: Excinuclease ABC, C subunit-like protein;
n=3; Sphingomonadales|Rep: Excinuclease ABC, C
subunit-like protein - Novosphingobium aromaticivorans
(strain DSM 12444)
Length = 99
Score = 35.9 bits (79), Expect = 1.1
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 216 DSVHQQGVVRVHSRQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVY 377
D + G V + + G +Y G+TS+L RR+ QH N G+ + +RLV+
Sbjct: 2 DREQRGGWVYIMADHYRGSMYVGVTSHLARRVFQHRNGTGSDYCARHSLVRLVW 55
>UniRef50_Q2G9S1 Cluster: Excinuclease ABC, C subunit-like protein;
n=2; Novosphingobium aromaticivorans DSM 12444|Rep:
Excinuclease ABC, C subunit-like protein -
Novosphingobium aromaticivorans (strain DSM 12444)
Length = 118
Score = 35.9 bits (79), Expect = 1.1
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +3
Query: 213 DDSVHQQGVVRVHSRQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVY 377
D + + G V + + + G +Y G+TS+L RR+ QH G+ + + RLVY
Sbjct: 8 DGRMEKGGWVYIMANRYRGGMYVGVTSDLVRRVWQHREGVGSSHVDDFGKTRLVY 62
>UniRef50_Q9RHE8 Cluster: Putative uncharacterized protein; n=1;
papaya bunchy top disease rickettsia|Rep: Putative
uncharacterized protein - papaya bunchy top disease
rickettsia
Length = 109
Score = 35.9 bits (79), Expect = 1.1
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 216 DSVHQQGVVRVHSRQDNGKLYTGITSNLNRRIKQHSNK 329
+++ +Q V + + NG LY GITSN+ RRI +H NK
Sbjct: 40 NNIMKQYYVYILASIRNGTLYIGITSNIIRRICEHKNK 77
>UniRef50_A4LZS0 Cluster: Excinuclease ABC, C subunit domain
protein; n=4; Proteobacteria|Rep: Excinuclease ABC, C
subunit domain protein - Geobacter bemidjiensis Bem
Length = 93
Score = 35.9 bits (79), Expect = 1.1
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 264 NGKLYTGITSNLNRRIKQHSNKQGAKCLR 350
+G YTGIT+++ RR++QH+ GAK R
Sbjct: 12 DGTFYTGITTDIARRLRQHATGSGAKYFR 40
>UniRef50_A1CLS1 Cluster: Putative uncharacterized protein; n=1;
Aspergillus clavatus|Rep: Putative uncharacterized
protein - Aspergillus clavatus
Length = 431
Score = 35.9 bits (79), Expect = 1.1
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +3
Query: 276 YTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHSARRTTTKPPPAWNTILSVNAASIS 455
Y IT L R + + AK R + L + H R +P P W TI NA ++
Sbjct: 47 YAAITVQLTRHVVLRRCRS-AKTRRRDSGLFQILHKRRSIQEQPSPTWETISGDNAETLM 105
Query: 456 NC-VSSKPNH 482
C + P+H
Sbjct: 106 QCHLWQTPDH 115
>UniRef50_UPI0000E87E36 Cluster: hypothetical protein MB2181_00865;
n=1; Methylophilales bacterium HTCC2181|Rep:
hypothetical protein MB2181_00865 - Methylophilales
bacterium HTCC2181
Length = 102
Score = 35.5 bits (78), Expect = 1.5
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = +3
Query: 273 LYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVY---HSARRTTTK 404
LYTGIT+N+++RI+ H GAK + + +L++ H R + +K
Sbjct: 37 LYTGITNNVSKRIEDHEKGVGAKYTKGRSPFQLLFTEKHPNRSSASK 83
>UniRef50_Q6QXL5 Cluster: ORF95; n=9; Granulovirus|Rep: ORF95 -
Agrotis segetum granulosis virus (AsGV) (Agrotis
segetumgranulovirus)
Length = 309
Score = 35.5 bits (78), Expect = 1.5
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +2
Query: 23 SPAAHLTKNACKDSLTELAFQNETLRRFIFQQIN 124
S AH T ++SLTELAF+NE LRR + Q +N
Sbjct: 270 SNTAHRT-TPIQESLTELAFENEALRRGLIQDLN 302
>UniRef50_A1S1V1 Cluster: Endonuclease containing a URI domain; n=1;
Shewanella amazonensis SB2B|Rep: Endonuclease containing
a URI domain - Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B)
Length = 106
Score = 35.5 bits (78), Expect = 1.5
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 267 GKLYTGITSNLNRRIKQH--SNKQGAKCLRNATNLRLVY 377
G+LYTG+T+N+ RR +H + AK LR L LVY
Sbjct: 15 GELYTGVTTNVARRFDEHQCGGARAAKYLRGRGPLTLVY 53
>UniRef50_A5FFT3 Cluster: Excinuclease ABC, C subunit domain
protein; n=8; Bacteria|Rep: Excinuclease ABC, C subunit
domain protein - Flavobacterium johnsoniae UW101
Length = 101
Score = 35.1 bits (77), Expect = 1.9
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 234 GVVRVHSRQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLR-LVYH 380
G V + + + +Y G+TSNL +RI +H NK+ K NL LVY+
Sbjct: 4 GFVYIITNKYQTVVYVGVTSNLPKRILEHKNKKYPKSFSAKYNLNILVYY 53
>UniRef50_A4B511 Cluster: Hypothetical URI domain endonuclease; n=1;
Alteromonas macleodii 'Deep ecotype'|Rep: Hypothetical
URI domain endonuclease - Alteromonas macleodii 'Deep
ecotype'
Length = 118
Score = 35.1 bits (77), Expect = 1.9
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +3
Query: 267 GKLYTGITSNLNRRIKQHSN--KQGAKCLRNATNL--RLVYHSARRT 395
G+LYTGIT+ RRI QH K GAK L+ + L R V+ A ++
Sbjct: 34 GQLYTGITTEPKRRIAQHRGELKGGAKALKGKSPLVFRAVFEVANKS 80
>UniRef50_Q30TF2 Cluster: Excinuclease ABC, C subunit-like; n=2;
Proteobacteria|Rep: Excinuclease ABC, C subunit-like -
Thiomicrospira denitrificans (strain ATCC 33889 / DSM
1351)
Length = 79
Score = 34.7 bits (76), Expect = 2.6
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +3
Query: 273 LYTGITSNLNRRIKQH-SNKQGAKCLRNATNLRLVY 377
LYTGIT +L+RR+ +H S+++ AK R L ++Y
Sbjct: 9 LYTGITIDLSRRLNEHNSSQKAAKYTRTRRPLEMIY 44
>UniRef50_Q21GK3 Cluster: Excinuclease ABC, C subunit-like protein;
n=1; Saccharophagus degradans 2-40|Rep: Excinuclease
ABC, C subunit-like protein - Saccharophagus degradans
(strain 2-40 / ATCC 43961 / DSM 17024)
Length = 106
Score = 34.7 bits (76), Expect = 2.6
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 264 NGKLYTGITSNLNRRIKQHSN-KQGAKCLRNATNLRLVYHSA 386
+G YTG+T ++ RR+ +H++ K GAK R +++VY A
Sbjct: 21 DGSYYTGVTVDIARRVHEHNHAKLGAKYTRARRPVKVVYSEA 62
>UniRef50_Q1QV31 Cluster: Excinuclease ABC, C subunit-like protein;
n=1; Chromohalobacter salexigens DSM 3043|Rep:
Excinuclease ABC, C subunit-like protein -
Chromohalobacter salexigens (strain DSM 3043 / ATCC
BAA-138 / NCIMB13768)
Length = 99
Score = 34.7 bits (76), Expect = 2.6
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +3
Query: 267 GKLYTGITSNLNRRIKQH-SNKQGAKCLRNATNLRL 371
G LYTG+T+++ RR ++H K+GA+ LR L L
Sbjct: 23 GALYTGVTTDVARRFREHRDGKRGARALRGKGPLTL 58
>UniRef50_Q0LV83 Cluster: Excinuclease ABC, C subunit-like; n=1;
Caulobacter sp. K31|Rep: Excinuclease ABC, C
subunit-like - Caulobacter sp. K31
Length = 122
Score = 34.7 bits (76), Expect = 2.6
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 234 GVVRVHSRQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYH 380
G V + + + G LY G+TS+L+RR+ +H G+ R RLVY+
Sbjct: 30 GHVYILASKPYGTLYIGVTSDLSRRVWEHREGLGSLFCRKYGVHRLVYY 78
>UniRef50_Q88VJ1 Cluster: UPF0213 protein lp_2058; n=6;
Lactobacillus|Rep: UPF0213 protein lp_2058 -
Lactobacillus plantarum
Length = 101
Score = 34.7 bits (76), Expect = 2.6
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +3
Query: 273 LYTGITSNLNRRIKQHSNKQGAKC--LRNATNLRLVYH 380
LY G T NL RR+ H+ +GAK +R+ L+L+YH
Sbjct: 29 LYGGFTDNLQRRLATHNAGKGAKYTRVRSRRPLQLIYH 66
>UniRef50_Q2SR54 Cluster: Cation-transporting ATPase; n=2;
Mycoplasma|Rep: Cation-transporting ATPase - Mycoplasma
capricolum subsp. capricolum (strain California kid /
ATCC27343 / NCTC 10154)
Length = 911
Score = 34.3 bits (75), Expect = 3.4
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 616 NRNNFSEPVYKMPIDDMMVGYNNTTSNVSAGIIILISVVAFIALFLLL 759
N++N+S + + DD + Y + V+ +I LISV+ FI F+ L
Sbjct: 273 NKDNYSNSLIDLITDDFVTDYEKGINKVTKILIYLISVLVFIITFISL 320
>UniRef50_Q1LH87 Cluster: Excinuclease ABC, C subunit-like protein;
n=1; Ralstonia metallidurans CH34|Rep: Excinuclease ABC,
C subunit-like protein - Ralstonia metallidurans (strain
CH34 / ATCC 43123 / DSM 2839)
Length = 98
Score = 34.3 bits (75), Expect = 3.4
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 273 LYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLV 374
+YTGIT+++ RR QH GAK R+ LRL+
Sbjct: 27 IYTGITTDVQRRYAQHRAGTGAKYTRSRRPLRLL 60
>UniRef50_Q089V4 Cluster: Excinuclease ABC, C subunit domain
protein; n=2; Shewanella|Rep: Excinuclease ABC, C
subunit domain protein - Shewanella frigidimarina
(strain NCIMB 400)
Length = 107
Score = 34.3 bits (75), Expect = 3.4
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 264 NGKLYTGITSNLNRRIKQH--SNKQGAKCLRNATNLRLVYHSA 386
N LYTGIT+++ RR +H S + AK L+ L LVY +
Sbjct: 28 NSHLYTGITTDIARRFAEHQASGPKAAKYLKGKGPLTLVYQES 70
>UniRef50_A4J4G2 Cluster: Excinuclease ABC, C subunit domain
protein; n=3; Clostridiales|Rep: Excinuclease ABC, C
subunit domain protein - Desulfotomaculum reducens MI-1
Length = 88
Score = 34.3 bits (75), Expect = 3.4
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +3
Query: 273 LYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVY 377
LYTGIT++L RR++QH + +K R ++LVY
Sbjct: 17 LYTGITNDLKRRLQQHLLGKASKYTRCRLPVQLVY 51
>UniRef50_A1RI21 Cluster: Excinuclease ABC, C subunit domain
protein; n=8; Bacteria|Rep: Excinuclease ABC, C subunit
domain protein - Shewanella sp. (strain W3-18-1)
Length = 102
Score = 34.3 bits (75), Expect = 3.4
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 231 QGVVRVHSRQDNGKLYTGITSNLNRRIKQHSN 326
Q V + + Q NG LY G+TS L +R+ QH N
Sbjct: 2 QPYVYIMASQFNGTLYIGVTSQLEQRVWQHKN 33
>UniRef50_Q5QZJ7 Cluster: Predicted endonuclease containing a URI
domain; n=2; Alteromonadales|Rep: Predicted endonuclease
containing a URI domain - Idiomarina loihiensis
Length = 83
Score = 33.9 bits (74), Expect = 4.5
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +3
Query: 276 YTGITSNLNRRIKQHS--NKQGAKCLRNATNLRLVYHSARRTTTK 404
YTG+T+++ RR+ +H+ +K+GAK R + LV+ TK
Sbjct: 16 YTGVTTDIERRVNEHNTDDKKGAKYTRARRPVALVWSEEHPNRTK 60
>UniRef50_Q07QY7 Cluster: Excinuclease ABC, C subunit domain
protein; n=3; Rhizobiales|Rep: Excinuclease ABC, C
subunit domain protein - Rhodopseudomonas palustris
(strain BisA53)
Length = 95
Score = 33.9 bits (74), Expect = 4.5
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 228 QQGVVRVHSRQDNGKLYTGITSNLNRRIKQH 320
+Q V + + + NG LYTG+TSN+ RR +H
Sbjct: 2 KQPCVYIVANRRNGTLYTGVTSNMPRRAHEH 32
>UniRef50_Q3IE32 Cluster: Putative uncharacterized protein; n=2;
Alteromonadales|Rep: Putative uncharacterized protein -
Pseudoalteromonas haloplanktis (strain TAC 125)
Length = 104
Score = 33.5 bits (73), Expect = 5.9
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 267 GKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVY-HS 383
G YTGIT+N+ +R+ H GAK L+ L L++ HS
Sbjct: 33 GHWYTGITTNVEQRLATHQAGNGAKNLKGKGPLLLIHQHS 72
>UniRef50_A1FNL2 Cluster: Excinuclease ABC, C subunit-like; n=4;
Pseudomonadaceae|Rep: Excinuclease ABC, C subunit-like -
Pseudomonas putida W619
Length = 94
Score = 33.5 bits (73), Expect = 5.9
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 255 RQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVY 377
R NG LY GI+ + RR H QGA+ + + LVY
Sbjct: 19 RAANGSLYCGISDDPQRRFVAHQKGQGARYFKTSPAQALVY 59
>UniRef50_Q51440 Cluster: UPF0213 protein in ldhD 5'region; n=3;
Lactobacillales|Rep: UPF0213 protein in ldhD 5'region -
Pediococcus acidilactici
Length = 98
Score = 33.5 bits (73), Expect = 5.9
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 273 LYTGITSNLNRRIKQHSNKQGAKCLR 350
LYTG T NL +R+ +H++ QGAK R
Sbjct: 21 LYTGYTVNLKQRVARHNSGQGAKYTR 46
>UniRef50_Q3CK93 Cluster: Excinuclease ABC, C subunit, N-terminal;
n=1; Thermoanaerobacter ethanolicus ATCC 33223|Rep:
Excinuclease ABC, C subunit, N-terminal -
Thermoanaerobacter ethanolicus ATCC 33223
Length = 107
Score = 33.1 bits (72), Expect = 7.9
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 261 DNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVYHSARR 392
+ GK+Y G TSN+ R H K+ K R RLVY+ A R
Sbjct: 32 EKGKIYIGYTSNIKERYLAHQRKE-VKSTREG-KWRLVYYEAYR 73
>UniRef50_A6DRF3 Cluster: Putative helicase; n=1; Lentisphaera
araneosa HTCC2155|Rep: Putative helicase - Lentisphaera
araneosa HTCC2155
Length = 1813
Score = 33.1 bits (72), Expect = 7.9
Identities = 24/71 (33%), Positives = 32/71 (45%)
Frame = +3
Query: 174 LGQTRKDALYNHGDDSVHQQGVVRVHSRQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRN 353
+ Q DAL+ DD ++ VV SRQD KL GI + R + + S QG L
Sbjct: 725 VNQLLLDALFREFDDEQAKKLVVFTDSRQDAAKLAAGIELDHYRDLVRQSLMQGFDKLGG 784
Query: 354 ATNLRLVYHSA 386
+ L Y A
Sbjct: 785 DKGIALKYLEA 795
>UniRef50_A5WDC9 Cluster: Sec-independent protein translocase, TatC
subunit; n=6; Moraxellaceae|Rep: Sec-independent protein
translocase, TatC subunit - Psychrobacter sp. PRwf-1
Length = 289
Score = 33.1 bits (72), Expect = 7.9
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +1
Query: 622 NNFSEP-VYKMPIDDMMVGYNNTTSNVSAGIIILISVVAFIALFLLLYQ 765
N S+P V ++PI+ M+ + TSN A I + I V AF+A+ +LYQ
Sbjct: 77 NLLSDPLVAQLPINSTMIA-TDITSNFMAPIRLTIFVAAFLAMPYILYQ 124
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 720,052,023
Number of Sequences: 1657284
Number of extensions: 14056689
Number of successful extensions: 39435
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 37904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39419
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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