Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120594.Seq
         (772 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    23   2.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.2  

>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = -3

Query: 245 THHTLLVYRVVAMIIQCVLSCL 180
           TH T+  ++++ ++  C ++CL
Sbjct: 203 THITMAHFKIIQVVPYCYINCL 224


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 204  NHGDDSVHQQGVVRVHSRQDNGKLYTGITSNLNRRIKQHSN 326
            ++G DSV  Q +V          L +  T++L  ++K H +
Sbjct: 1381 DYGQDSVTHQLIVNAPPHAPQIALTSTTTNSLTFKLKPHES 1421


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 252 NVHAPHLVGVQSRRHDY 202
           N H PH +  +SRR  Y
Sbjct: 601 NFHGPHRLAARSRRCCY 617


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 252 NVHAPHLVGVQSRRHDY 202
           N H PH +  +SRR  Y
Sbjct: 493 NFHGPHRLAARSRRCCY 509


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,360
Number of Sequences: 336
Number of extensions: 3671
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)