Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120594.Seq
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    29   0.56 
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    28   1.7  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    27   3.9  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   6.9  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +1

Query: 529 WTCHTIGWATTKRWNTSR*NWRSTMISPANRNNFSEPVYKMPIDDMMVGYNNTTSNVS 702
           WTC T  +AT ++ +T +    +   + A  NN      +  +  ++ G+N   SNVS
Sbjct: 303 WTCATCSFATQRKKSTFQKENANVDANHATENNLEGQATQKSV-SILKGHNKALSNVS 359


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 595 STMISPANRNNFSEPVYKMPIDDMMVGYNNTTSNVSAG 708
           S +  P  RN+F E     P     +G +  +SN+S+G
Sbjct: 518 SKLTVPVERNSFRETESPKPFLSRQIGISTLSSNISSG 555


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 201 YNHGDDSVHQQGVVRVHSRQDNGKLYTGI-TSNLNRRIKQHSNKQGAKCL-RNATNLRLV 374
           YN  DDS     V    +++ +   + G+ +SN N+R  ++S++ G+  + R  ++   +
Sbjct: 4   YNDDDDSSRPPSVHSERNQKPSSSQFLGVPSSNYNQR--ENSSRSGSSTISREPSSSGTM 61

Query: 375 YHSARRTTTK 404
           Y  A R + K
Sbjct: 62  YPMASRDSMK 71


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 355  ALRKHLAPCLFECCFMRLLRLLVMPV 278
            +L +H  PC+ + CF + LR  ++ +
Sbjct: 1298 SLMQHFLPCILDSCFSKNLRYSMLGI 1323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,728
Number of Sequences: 5004
Number of extensions: 58943
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)