Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120594.Seq
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477     29   4.1  
07_03_1759 + 29285262-29287208                                         28   7.2  
01_05_0060 + 17742566-17742826,17744132-17744246,17746818-177469...    28   7.2  
04_04_1687 - 35365766-35366356,35367137-35368135                       28   9.5  

>03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477
          Length = 668

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 336 AKCLRNATNLRLVYHSARRTTTKPPPAW 419
           A CLR+  +L+L+Y +A R    P P W
Sbjct: 356 ADCLRDLDHLKLLYDAALRDGKLPGPRW 383


>07_03_1759 + 29285262-29287208
          Length = 648

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 342 CLRNATNLRLVYHSARRTTTKPPPAW 419
           CLR+  +L+L+Y +A R    P P W
Sbjct: 393 CLRDLEHLKLLYDAALRDGKLPGPTW 418


>01_05_0060 +
           17742566-17742826,17744132-17744246,17746818-17746993,
           17747323-17747418,17747504-17747782
          Length = 308

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 413 GRRFCSRTPRAVIHEP*IGCVAQ-TLGALFVRMLFYASVKV 294
           G+RFC    R +IH+P  G   + T   L +R + Y  +K+
Sbjct: 162 GKRFCMPNARIMIHQPSGGAGGKVTEMGLQIREMMYEKIKI 202


>04_04_1687 - 35365766-35366356,35367137-35368135
          Length = 529

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 568 WNTSR*NWRSTMISPANRNNFSEPVYKMPID--DMMVGYNNTTSNVSAGI 711
           W T    W ++  S + +N F  P    P+D   + +G   + +N+SA +
Sbjct: 329 WRTLEVEWDASAASSSMKNRFVNPWQVQPVDFPPLPMGLKISNNNISAPV 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,620,059
Number of Sequences: 37544
Number of extensions: 389754
Number of successful extensions: 1018
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)