Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120594.Seq
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5377| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_7910| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_45044| Best HMM Match : Thioredoxin (HMM E-Value=1.1)               28   9.6  

>SB_5377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 301 LRLLVMPVYNFPLSCRECTRTTP-CWCTESSP*LYSASFR 185
           +++ VM V    +   +C+RTTP CWC+      Y  S R
Sbjct: 41  IKMAVMGVVTMNIPHGKCSRTTPWCWCSWRRSDSYGRSAR 80


>SB_7910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 261 DNGKLYTGITSNLNRRIKQ-HSNKQGAKCLRNATNLRLVY 377
           D      GI + +  RIK+ H N +   CL +A NL +V+
Sbjct: 308 DGASNMAGIRNGVQARIKEVHPNAEYVHCLAHALNLSIVH 347


>SB_45044| Best HMM Match : Thioredoxin (HMM E-Value=1.1)
          Length = 213

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 198 LYNHGDDSVHQQGVVRVHSRQDNGKLYTGITSNLNRRIKQ 317
           +Y    DSV  + VV  H R    K Y G  S + R +KQ
Sbjct: 58  IYFMDPDSVVLKDVVNAHGRHKETKYYYGKVSEIVRSMKQ 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,693,653
Number of Sequences: 59808
Number of extensions: 460024
Number of successful extensions: 1351
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)