Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120594.Seq
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z31590-7|CAA83463.1|  361|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical ...    28   6.4  

>Z31590-7|CAA83463.1|  361|Caenorhabditis elegans Hypothetical
           protein R01H10.6 protein.
          Length = 361

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +3

Query: 309 IKQHSNKQGAKCLRNATNLRLVYHSARRTTTKPPPAWNTILSVNAASISNCVS 467
           ++      G +     TNLRL++H+A          WN I  V +   ++ V+
Sbjct: 39  VEDTKGNNGDRGTMRVTNLRLIWHAASMPRINITIGWNAITGVQSKQTTSLVT 91


>AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical
           protein C41D11.6 protein.
          Length = 852

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 470 KAKPLLLHKFLLAISCKHEFGRAILSVGQPRKGGIHPVEIGAQR*YHQRTATILASP 640
           +AKP +L +    I  +  F   + SV +P   G HP  I A R  H     +L SP
Sbjct: 706 EAKPEVLTEDDFPILWREVFTEVVQSVNRPNVRGTHPAIIDAAR--HLNAHGLLPSP 760


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,724,200
Number of Sequences: 27780
Number of extensions: 342488
Number of successful extensions: 924
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)