Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120594.Seq
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   5.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   7.3  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 697 VSAGIIILISV-VAFIALFLLLYQY 768
           +SA  ++   + V F+ LFL++Y Y
Sbjct: 212 LSASYLVCYGIWVYFVPLFLIIYSY 236


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 697 VSAGIIILISV-VAFIALFLLLYQY 768
           +SA  ++   + V F+ LFL++Y Y
Sbjct: 88  LSASYLVCYGIWVYFVPLFLIIYSY 112


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 16/71 (22%), Positives = 26/71 (36%)
 Frame = +3

Query: 177 GQTRKDALYNHGDDSVHQQGVVRVHSRQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNA 356
           G  + D   N    + ++Q   R +  + N     G   N N+R     N        N 
Sbjct: 472 GNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNN 531

Query: 357 TNLRLVYHSAR 389
            N   V+HS++
Sbjct: 532 RNDNQVHHSSK 542


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,722
Number of Sequences: 438
Number of extensions: 4113
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)