Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120594.Seq
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43210.1 68418.m05280 endo/excinuclease amino terminal domain...    29   3.4  
At4g00330.1 68417.m00042 protein kinase family protein contains ...    28   7.9  

>At5g43210.1 68418.m05280 endo/excinuclease amino terminal
           domain-containing protein contains Pfam domain PF01541:
           Endo/excinuclease amino terminal domain
          Length = 170

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +3

Query: 270 KLYTGITSNLNRRIKQHSN--KQGAK 341
           K Y GIT++ +RR+KQH+   + GAK
Sbjct: 67  KTYVGITTDFSRRLKQHNGEIRGGAK 92


>At4g00330.1 68417.m00042 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 411

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 629 KLLRFAGDIIVERQFQRDVFHLFVVAQPIVWHVQIHVYNLLLTEIYATKV 480
           K L  A  + +       + +L +  QP + H  I   N+LLTE Y  KV
Sbjct: 214 KTLDMATRLDIATDVAHAITYLHMYTQPPIIHRDIKSSNILLTENYRAKV 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,521,159
Number of Sequences: 28952
Number of extensions: 309394
Number of successful extensions: 749
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)