Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120593.Seq
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 30 0.25
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 27 1.8
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 27 1.8
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 27 2.3
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 27 3.1
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 3.1
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 4.1
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 26 4.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.4
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 25 7.2
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 25 7.2
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 25 7.2
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 9.5
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 30.3 bits (65), Expect = 0.25
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 497 KQLWQFFSIQYGDIHKHNNIFGNILQRHLQSDFPLKMEPNVCIHLPDKNKTS 652
KQL FFS + +HK F +L+RHL D K ++C P K T+
Sbjct: 198 KQLDHFFSYKVTTVHKSYQRFATLLRRHL-LDKTAKRYHDLCEKRPYKYITT 248
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 439 TLGPMVYVVLPLAGSNTTIFLSGSGY 362
T+ V VVLP AG+NT +SGS +
Sbjct: 290 TVSGTVEVVLPTAGTNTMTVVSGSRF 315
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 439 TLGPMVYVVLPLAGSNTTIFLSGSGY 362
T+ V VVLP AG+NT +SGS +
Sbjct: 430 TVSGTVEVVLPTAGTNTMTVVSGSRF 455
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 16 ATKRKIGDSSSDDNQPKRERVES 84
A+KRKI SSSDD++ K E S
Sbjct: 131 ASKRKIARSSSDDSESKVESTNS 153
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 471 DFGTIKRAKSNFGSFLAFNTETFTNTT 551
+FGTIK+ +SN S +T T T T
Sbjct: 322 EFGTIKQGQSNVSSITGTSTSTTTAAT 348
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 394 NTTIFLSGSGYNLSSHSCKLFKLASRQNSF 305
NT ++ +G G ++ +H +LFK R F
Sbjct: 290 NTHLYANGEGQHIKNHLLELFKKLHRTQDF 319
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 424 VYVVLPLAGSNTTIFLSGSGYNLSS 350
V VV+P AG TT SGS Y +S+
Sbjct: 173 VEVVIPTAGYITTTLTSGSSYPVST 197
>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 424 VYVVLPLAGSNTTIFLSGSGYNLSS 350
V VV+P AG+ TT SGS Y +++
Sbjct: 130 VEVVIPTAGTFTTTLTSGSSYPVAT 154
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 646 FVLIRQMNAHVWFHFQRKIALQVSLQ-NVAKYIVVF 542
FVL+RQM + H QR L +++Q + YI +F
Sbjct: 318 FVLLRQMRINSPSHVQRLSFLTIAMQAGLDAYIAIF 353
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 20 LNARLAIRAATTTSQSGKEWK 82
LNA L +RA S SGK W+
Sbjct: 200 LNASLTVRAHQAASHSGKGWE 220
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 5.4
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = -1
Query: 409 PLAGSNTTIFLSGSGYNLSS-HSCKLFKLASRQNSFFKNLPSKQLQFSIEKLPVSH*SPF 233
PL N+T S S L+S +S ++S S+ N S S+ P+S +
Sbjct: 488 PLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSY--NTSSVLPTSSVSSTPLSS-ANS 544
Query: 232 APATTSLSTRVAPIERTTA*NSTLRPF 152
AT++ ST + + TTA +++ PF
Sbjct: 545 TTATSASSTPLTSVNSTTATSASSTPF 571
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 361 NLSSHSCKLFKLASRQNSFFKNLPSKQLQFSIEK 260
N + C+ + +NSFFKNL S +SI K
Sbjct: 1202 NTVKYLCEYDSIDKVRNSFFKNLNSFYEMYSIAK 1235
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 109 YNNNNGAAFNVKHDETG--VMCYFTPSSVQLE 198
++NN+ N+KH E G + Y TP +LE
Sbjct: 61 FHNNHSVILNIKHPELGEPLKPYQTPLPPELE 92
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 237 HLLLPQHLCQLAWLQLNGRRR 175
H+++PQ Q +W+ +GR R
Sbjct: 330 HVVIPQDAQQSSWISFDGRNR 350
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = -1
Query: 466 NQNPQGLPCTLGPMVYVVLPLAGSNTTIFL--SGSGYNLSSHSCKLFKLASRQNS--FFK 299
N + G P +L + PLA S T+ L S S NL LF+ + +N+ +F
Sbjct: 203 NNSSSGFPSSLNGIPIASPPLATSPTSFSLASSASSTNLGGSKGLLFQQMTSENNRDYFS 262
Query: 298 NLPS 287
P+
Sbjct: 263 RRPT 266
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 366 DTTCLPIRANYSN*PVDKIRFSKICLRNNYNSVLKSC 256
DT L N+S + ++ F++ LRN +L C
Sbjct: 1226 DTPLLEFSKNFSGGQIQRLAFARALLRNPRLLILDEC 1262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,015
Number of Sequences: 5004
Number of extensions: 64573
Number of successful extensions: 213
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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