Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120593.Seq
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    35   0.065
12_01_0748 - 6728221-6728305,6728788-6728842,6729202-6729289,672...    29   2.4  
12_02_0878 + 23952594-23952802,23954846-23955083,23955122-239552...    29   4.2  
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419...    28   7.4  

>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 12/122 (9%)
 Frame = +3

Query: 291 GRFLKNEFCRLANLNSLHEWEDKLYPEPD--KNIVVLEPANG---KTTYTIGPRVQGKP- 452
           GR L        + + L  W   LY   D    + +LE A G   K  ++IGP +Q KP 
Sbjct: 342 GRILSRSHSIALSSSCLSTWHHLLYKLGDLINQLPILEAAFGPVLKIVFSIGPDIQNKPL 401

Query: 453 ---CGFWFSDFGTIK-RAKSNFGSFL--AFNTETFTNTTIYLATFCKDTCKAIFL*KWNQ 614
              C   F ++ + K R  ++ G +L    N    + + I+L T     C  I    W+ 
Sbjct: 402 YSFCVNLFHEYISTKVRDMASHGEYLPIPLNQNLLSQSCIHLKTLMDGQC--IRWLPWDV 459

Query: 615 TC 620
           TC
Sbjct: 460 TC 461


>12_01_0748 -
           6728221-6728305,6728788-6728842,6729202-6729289,
           6729681-6729818,6729978-6730142,6730235-6730354,
           6730555-6730631,6730738-6731113,6731523-6732617
          Length = 732

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +2

Query: 491 CQKQLWQFFSIQYGDIHKHNNIFGNILQRHLQSDFPLKMEPNVCIHLP 634
           C    W    +Q G    H    G +++ HL S FP++++    I  P
Sbjct: 600 CISGTWHLGKLQVGLSRAHRLAQGKVIRLHLHSSFPVQVDGEPWIQPP 647


>12_02_0878 +
           23952594-23952802,23954846-23955083,23955122-23955238,
           23955719-23955818,23956168-23956196,23956477-23956704
          Length = 306

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 557 FGNILQRHLQSDFPLKMEPNVCIHLPDK 640
           FG ++   L+++  LK+EP + + L DK
Sbjct: 260 FGQVVSEDLENEIKLKIEPELAVELYDK 287


>09_03_0111 -
           12440818-12441129,12441242-12441585,12441663-12441989,
           12443444-12443602,12443687-12443784,12444745-12444821
          Length = 438

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 273 NCSCFEGRFLKNEFC 317
           +CSC+ G ++KN FC
Sbjct: 83  DCSCYPGSYMKNGFC 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,902,553
Number of Sequences: 37544
Number of extensions: 416412
Number of successful extensions: 1247
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)