Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120593.Seq
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)                 31   1.1  
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                       30   1.4  
SB_17977| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_19562| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)            28   5.7  
SB_42686| Best HMM Match : Pkinase (HMM E-Value=0)                     28   7.6  
SB_48346| Best HMM Match : PDZ (HMM E-Value=1.5e-33)                   28   7.6  

>SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)
          Length = 469

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 336 SLHEWEDKLYPEPDKNIVVLEPANGKTTYTIGPRVQGKPCGFWF 467
           S   +ED+LY +   N + L+PA+ + +  I  R Q + C  WF
Sbjct: 10  SYQAYEDELYGQTSPNSLSLQPAS-RLSAKILHRFQNRSCASWF 52


>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 462 WFSDFGTIKRAKSNFGSFLAFNTETFTNTTIYLATFCKDT 581
           WF   GT++      G F      TFT+  I + TF KDT
Sbjct: 307 WFDKDGTLRAINPESGFFGVCPGTTFTSNPIAMKTFQKDT 346


>SB_17977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 46  SDDNQPKRERVESGEDQQLVPYNNNNGAAFNVKHDETGV 162
           SDDN+   +R + G D      +N NG  +NVK+ + GV
Sbjct: 109 SDDNKGDIDRGDGGNDDSSGGNDNRNG-GYNVKNYDNGV 146


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +3

Query: 234  NGD*CETGNFSILNCSCFEGRFLKNEFCRLANLNSLHEWEDKLYPEPDKNIVVLEPANGK 413
            NG  C     S+  C+C  G    N    L + NSL +     + +PD   V+L+   G 
Sbjct: 4409 NGGTCIPSGPSVYTCTCTPGVTGANCETGLGSTNSLSQLNQVAF-DPDSKHVILKEYEGL 4467

Query: 414  TTY 422
              Y
Sbjct: 4468 AAY 4470


>SB_19562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 472 SENQNPQGLPCTLGPMVYVVLPLAG 398
           S + NPQ +P T  P + VV+P AG
Sbjct: 47  SVSPNPQAMPMTSRPQLKVVIPSAG 71


>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
          Length = 1774

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 25  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFN 138
           +K GD+  D + P  E+ ES EDQ+   +N    AA N
Sbjct: 826 KKGGDAGDDPSDPDEEKDESEEDQERKRHNKK--AALN 861


>SB_42686| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 759

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 25  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFNVK 144
           R +G + S DN+    R+E+   ++L P   N  +  +VK
Sbjct: 127 RNLGSTGSSDNRTHYRRIETKAPRRLEPLKPNTASRTSVK 166


>SB_48346| Best HMM Match : PDZ (HMM E-Value=1.5e-33)
          Length = 708

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 397 SRPTARLRTPSVQECRASPADFGFPTLEP*NVPKAT 504
           S  T RLRTPS ++ +ASP +    T+E   V K+T
Sbjct: 162 SASTKRLRTPSKEDIKASPLNNN--TIEQVGVEKST 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,039,218
Number of Sequences: 59808
Number of extensions: 500779
Number of successful extensions: 1465
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)