Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120593.Seq
         (652 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060753-1|AAL28301.1|  271|Drosophila melanogaster GH20409p pro...    30   2.4  
AE014296-2654|AAZ66062.1|  166|Drosophila melanogaster CG33687-P...    30   2.4  
AE014134-406|AAF51257.1|  271|Drosophila melanogaster CG3557-PA ...    30   2.4  
AJ133103-1|CAB63452.1|  897|Drosophila melanogaster RFX transcri...    29   7.2  
AE014297-1144|AAF54526.2|  897|Drosophila melanogaster CG6312-PA...    29   7.2  
AY128431-1|AAM75024.1|  667|Drosophila melanogaster GM10569p pro...    28   9.6  
AE013599-2212|AAF58047.1| 1448|Drosophila melanogaster CG8443-PA...    28   9.6  

>AY060753-1|AAL28301.1|  271|Drosophila melanogaster GH20409p
           protein.
          Length = 271

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 340 CTNGKTSCIPSPIKISWCWSRPTARLRTPSVQECRASPADFGFPTLEP*NVPKAT 504
           C++G +S  PS    S C S+P+     P    C ASP     P   P + PK++
Sbjct: 85  CSSGSSSAYPSSSAWSTCCSKPSTICCYPKPTRCCASPKAPLVP-CSPMDTPKSS 138


>AE014296-2654|AAZ66062.1|  166|Drosophila melanogaster CG33687-PA
           protein.
          Length = 166

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 258 NFSILNCSCFEGRFLKNEFCRLANLNSLHEWED---KLYPEPDKNIVV 392
           +F+ L C   +  F   E CR+  +N  H++ D   KLY  P  NI++
Sbjct: 13  SFTNLKCEMIDRTFGNFEMCRIKAVNRTHKYIDINLKLYILPINNIMI 60


>AE014134-406|AAF51257.1|  271|Drosophila melanogaster CG3557-PA
           protein.
          Length = 271

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 340 CTNGKTSCIPSPIKISWCWSRPTARLRTPSVQECRASPADFGFPTLEP*NVPKAT 504
           C++G +S  PS    S C S+P+     P    C ASP     P   P + PK++
Sbjct: 85  CSSGSSSAYPSSSAWSTCCSKPSTICCYPKPTRCCASPKAPLVP-CSPMDTPKSS 138


>AJ133103-1|CAB63452.1|  897|Drosophila melanogaster RFX
           transcription factor protein.
          Length = 897

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 201 TRVDKDVVAGANGD*CETGNFSILNCSCFEGRFLKNEFCRLANLNSLHEWEDKLY 365
           T  D D   G   + CE+   ++LN       FL  +F R ++ N+L E E++ Y
Sbjct: 550 TLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKY 604


>AE014297-1144|AAF54526.2|  897|Drosophila melanogaster CG6312-PA
           protein.
          Length = 897

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 201 TRVDKDVVAGANGD*CETGNFSILNCSCFEGRFLKNEFCRLANLNSLHEWEDKLY 365
           T  D D   G   + CE+   ++LN       FL  +F R ++ N+L E E++ Y
Sbjct: 550 TLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKY 604


>AY128431-1|AAM75024.1|  667|Drosophila melanogaster GM10569p
           protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
 Frame = +1

Query: 4   VGSMATKRKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFNVKHDETGVMCYFTPS 183
           V S    +K G+     N+ K  +   G+ QQ    N N  ++ +            TP 
Sbjct: 178 VSSEEAHKKRGNGGKH-NKHKSSKGGKGQQQQQTTGNQNGSSSGSSNSSSASDWTLMTPR 236

Query: 184 SVQLEPRELTKMLWQEQM-AINVKRATFQY*IVVVS 288
           S+  + R+  K+ W  ++   +++ A  +Y I+ +S
Sbjct: 237 SLWQQIRKEAKVYWDWELDCDSIETAVSKYGILRIS 272


>AE013599-2212|AAF58047.1| 1448|Drosophila melanogaster CG8443-PA
            protein.
          Length = 1448

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
 Frame = +1

Query: 4    VGSMATKRKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFNVKHDETGVMCYFTPS 183
            V S    +K G+     N+ K  +   G+ QQ    N N  ++ +            TP 
Sbjct: 959  VSSEEAHKKRGNGGKH-NKHKSSKGGKGQQQQQTTGNQNGSSSGSSNSSSASDWTLMTPR 1017

Query: 184  SVQLEPRELTKMLWQEQM-AINVKRATFQY*IVVVS 288
            S+  + R+  K+ W  ++   +++ A  +Y I+ +S
Sbjct: 1018 SLWQQIRKEAKVYWDWELDCDSIETAVSKYGILRIS 1053


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,633,248
Number of Sequences: 53049
Number of extensions: 726091
Number of successful extensions: 2545
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2543
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)