Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120593.Seq
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37280.1 68415.m04573 ABC transporter family protein similar ...    30   1.5  
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik...    29   2.0  
At5g47690.1 68418.m05887 expressed protein                             28   4.7  
At5g10020.1 68418.m01161 leucine-rich repeat transmembrane prote...    28   6.2  
At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative ...    28   6.2  
At5g55380.1 68418.m06900 membrane bound O-acyl transferase (MBOA...    27   8.2  

>At2g37280.1 68415.m04573 ABC transporter family protein similar to
            PDR5-like ABC transporter GI:1514643 from [Spirodela
            polyrhiza]
          Length = 1413

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 512  FFSIQYGDIHKHNNIFG 562
            FFS QYGDIH+  N FG
Sbjct: 1347 FFSSQYGDIHQKINAFG 1363


>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like ABC
            transporter, Spirodela polyrrhiza, EMBL:Z70524
          Length = 1450

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 512  FFSIQYGDIHKHNNIFG 562
            F S QYGDIH+  N+FG
Sbjct: 1384 FISSQYGDIHEEINVFG 1400


>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 22   KRKIGDSSSDDNQPKRERVESGEDQQLVPYN-NNNGAAFNVKHDE 153
            KR +GD++S  + PKR R  SG      PY  +N+G    +K  E
Sbjct: 1227 KRNVGDATSVVSVPKRRRSSSGHS----PYKFSNSGPKVQLKASE 1267


>At5g10020.1 68418.m01161 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase ERECTA,
           Arabidopsis thaliana, EMBL:AC004484
          Length = 1048

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -1

Query: 415 VLPLAGSNTTIFLSGSGYNLSSHSCKLFKLASRQNSFFKNLPS--KQLQFSIEKLPVSH* 242
           VL L+ +N    LSGS  N +S   +L  L+ R NS   +LPS     QFS+  L  +  
Sbjct: 368 VLDLSSNN----LSGSLPNFTSAFSRLSVLSIRNNSVSGSLPSLWGDSQFSVIDLSSNKF 423

Query: 241 SPFAPAT 221
           S F P +
Sbjct: 424 SGFIPVS 430


>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative
           similar to DNA-binding protein DF1 [Pisum sativum]
           GI:13646986
          Length = 603

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 49  DDNQPKRERVESGEDQQLVPYNNNNGAAFN 138
           D+++ +    E G + +LVP NNNN    N
Sbjct: 572 DEDEEEENEEEEGGEFELVPSNNNNNKTTN 601


>At5g55380.1 68418.m06900 membrane bound O-acyl transferase (MBOAT)
           family protein / wax synthase-related  similar to wax
           synthase [gi:5020219] from Simmondsia chinensis
          Length = 341

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 95  WSSPLSTLSRFGWLSSLLESPILRLVAMLP 6
           W S L +LS   ++SS L   +LRL+++LP
Sbjct: 12  WISALISLSYCYYISSKLSKGVLRLLSILP 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,334,192
Number of Sequences: 28952
Number of extensions: 340593
Number of successful extensions: 1003
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)