Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120591.Seq
         (857 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    24   1.3  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   1.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   1.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   1.3  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    22   7.1  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    22   7.1  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 706 NVYIINIQRCGKKILSEHLSFTERLYYKYST 614
           +V+ ++  +C  +I+ EHL      YY+  T
Sbjct: 8   SVFRLDQDQCSHRIVREHLGLKHDNYYELET 38


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 706 NVYIINIQRCGKKILSEHLSFTERLYYKYST 614
           +V+ ++  +C  +I+ EHL      YY+  T
Sbjct: 322 SVFRLDQDQCSHRIVREHLGLKHDNYYELET 352


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 706 NVYIINIQRCGKKILSEHLSFTERLYYKYST 614
           +V+ ++  +C  +I+ EHL      YY+  T
Sbjct: 555 SVFRLDQDQCSHRIVREHLGLKHDNYYELET 585


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 706 NVYIINIQRCGKKILSEHLSFTERLYYKYST 614
           +V+ ++  +C  +I+ EHL      YY+  T
Sbjct: 555 SVFRLDQDQCSHRIVREHLGLKHDNYYELET 585


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -2

Query: 712 NVNVYIINIQRCGKKILSEHLSFTERLYYKYSTLLVLS 599
           + +VY + IQR   +I +  ++FT + ++  +  L+LS
Sbjct: 358 SADVYNLEIQRFIHQIGTLEVAFTGKNFFSITRGLILS 395


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -2

Query: 712 NVNVYIINIQRCGKKILSEHLSFTERLYYKYSTLLVLS 599
           + +VY + IQR   +I +  ++FT + ++  +  L+LS
Sbjct: 358 SADVYNLEIQRFIHQIGTLEVAFTGKNFFSITRGLILS 395


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,535
Number of Sequences: 336
Number of extensions: 4464
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23763101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)