Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120591.Seq
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1041 - 23876849-23876959,23877853-23878046,23878621-238786...    32   0.67 
11_06_0337 - 22454281-22456399,22458520-22459388                       30   2.7  
09_03_0065 + 12013715-12013720,12013899-12014612                       30   2.7  
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147...    29   3.6  
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172...    28   8.3  

>08_02_1041 -
           23876849-23876959,23877853-23878046,23878621-23878691,
           23878956-23879009,23879051-23879187
          Length = 188

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 417 IRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKI--DGFHDNI 295
           + ++T K  +  D+I +KV+  F ++E+E+ D    DG + NI
Sbjct: 146 VEAITEKIENFSDKIDAKVEPIFTEIEKEFEDSTSNDGVNANI 188


>11_06_0337 - 22454281-22456399,22458520-22459388
          Length = 995

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 375 IKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDE 277
           +KS V++    L +EY+  I G HD+IQY  DE
Sbjct: 12  VKSLVNKLGSLLAQEYT-LISGVHDDIQYINDE 43


>09_03_0065 + 12013715-12013720,12013899-12014612
          Length = 239

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +3

Query: 720 ACNFRDHYRAARDNNTITHVTERDR 794
           AC F  HY  A    TITH   RDR
Sbjct: 23  ACGFHLHYICAHAEETITHPLHRDR 47


>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
            21814849-21815049,21815320-21815433,21815513-21815671,
            21816490-21816849,21816928-21817149,21817967-21818093,
            21818887-21819023,21819169-21819292,21819665-21820174,
            21820255-21820436,21820812-21820862,21821114-21821266,
            21821339-21821437,21821519-21821861,21821957-21822030,
            21822105-21823025,21823133-21823257,21823419-21823461,
            21823574-21823762,21824814-21825074,21825228-21825387,
            21826200-21826363,21826523-21827009,21827090-21827431,
            21827519-21827836,21828001-21828041,21828136-21828388,
            21829158-21829261,21830198-21830386,21830543-21831196,
            21831320-21831610,21831739-21831882,21832107-21832205,
            21832549-21832657,21832739-21832923,21833008-21833121,
            21833270-21833401,21833483-21833815,21833945-21834436,
            21834773-21834847,21834917-21835066,21835143-21835241,
            21835463-21835547,21837188-21837375,21837513-21837647,
            21837729-21837849,21838127-21838194,21838275-21838370,
            21838450-21838554,21838665-21838980,21839053-21839142,
            21840011-21840181,21840850-21841010,21841088-21841270,
            21841839-21841940,21842515-21842632,21842704-21842798,
            21842972-21843022,21843107-21843241,21843333-21843436,
            21844249-21844414,21844649-21844773,21845220-21845316
          Length = 4181

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 839  TPQRPNGHIFIYTSGAVTFCNMSDCVVISGSAIM 738
            T + P   +F  ++  V+ C + DC+ +SG+A M
Sbjct: 2137 TAEPPLSSVFCLSASLVSSCGLRDCIPLSGNANM 2170


>12_01_0227 -
           1718726-1721183,1721804-1721957,1722090-1722165,
           1722327-1722485,1722552-1722662,1722791-1722841,
           1722948-1723192,1723745-1725278
          Length = 1595

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/73 (23%), Positives = 36/73 (49%)
 Frame = -3

Query: 579 LQNVCNFSGRNRRVPDGYSRLSCGEQTRELVYINKIMNTQLTKPVLMMFNISGPIRSVTR 400
           ++N  +F GRN   PDG   L+   + + + Y+NK+    + + V+++ +    I  + R
Sbjct: 686 VKNGLDFDGRNHEFPDGGESLNQLSE-QGISYLNKVAQNHIGERVIVVGH-GAAILELCR 743

Query: 399 KNNDLRDRIKSKV 361
             +     I+ K+
Sbjct: 744 HTDPPNSSIRRKI 756


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,372,844
Number of Sequences: 37544
Number of extensions: 418220
Number of successful extensions: 1014
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)