Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120591.Seq
         (857 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15052| Best HMM Match : Pox_A32 (HMM E-Value=0.0023)                31   1.6  
SB_30188| Best HMM Match : fn1 (HMM E-Value=0.48)                      30   2.1  
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)            30   2.8  
SB_17656| Best HMM Match : TIR (HMM E-Value=1.3)                       29   3.7  
SB_22778| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_36763| Best HMM Match : EGF (HMM E-Value=1.7e-06)                   29   4.8  
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)                    29   6.4  
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)                     28   8.5  

>SB_15052| Best HMM Match : Pox_A32 (HMM E-Value=0.0023)
          Length = 1901

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = -3

Query: 417  IRSVTRKNNDLRDRIKSKVDEQFD--QLEREYSDKIDGFHDNIQ-YFKDEHYSVSCQMAA 247
            +RS+ RKN +L +R  S +DE  +  QLERE  ++     D ++  FK   ++V+  + A
Sbjct: 1843 LRSIDRKNEELSER-NSVIDETLEENQLERENLEERMSLKDRVKAIFKKYGFTVAAVVTA 1901


>SB_30188| Best HMM Match : fn1 (HMM E-Value=0.48)
          Length = 334

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 393 NDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEH 274
           N  R+ +K KV +    LEREY D  + F+D +   +D H
Sbjct: 231 NLARESLKLKVRDSTLWLEREYMDSFERFNDKLPAKEDFH 270


>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
          Length = 1091

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 429 ISGPIRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEH 274
           +S P  S    +N    R+KS ++   D L+ ++S  +D  HD I+  K+E+
Sbjct: 776 VSAPSTSSDLNSNQ---RVKS-LENSLDFLQAQHSQVLDNLHDEIERLKEEN 823


>SB_17656| Best HMM Match : TIR (HMM E-Value=1.3)
          Length = 719

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 151 VDKHNDCYVAVCVLKPGFENGSNQVLSFEYNPIGNKVIVP 32
           ++K   C V V +L PGF+  S     +E+     K I+P
Sbjct: 268 LEKIKACSVFVPILTPGFQESSKHQQEYEFARANQKQIIP 307


>SB_22778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 620

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = -3

Query: 417 IRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEH 274
           IRS   K  D  D+ + + +++ D+  + Y D +    D+++  +  H
Sbjct: 561 IRSALTKERDSMDKERERFNQKLDETRQHYEDVLRQLRDDLEEERQGH 608


>SB_36763| Best HMM Match : EGF (HMM E-Value=1.7e-06)
          Length = 155

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = -2

Query: 202 TDKKSIETYEKYCLPQLVDKHNDCYVAV----CVLKPGFENGSN 83
           T KK    Y+  C P L   H DC   +    C   PGFE G N
Sbjct: 41  TKKKKALCYKASCQPLLCGLHGDCVEVIQSYKCECHPGFE-GDN 83


>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 2322

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -3

Query: 411 SVTRKNNDLRDRIKSKVDEQFDQLEREYSDKI 316
           SVT++NN++++R+K   +E+  +   E  DK+
Sbjct: 199 SVTQRNNEIQERLKQLEEEEEARKRAELEDKM 230


>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
          Length = 1691

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = -3

Query: 456 TKPVLMMFNISGPIRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDE 277
           T P +   N S  +RS+ RKN +L   +K K+DE+  QL    ++ +    ++ +  +D+
Sbjct: 375 TSPKMDRTNGSQELRSLQRKNVELSSLVK-KLDEKNQQLATRNAELMSELENSNKEHRDK 433

Query: 276 H 274
           +
Sbjct: 434 N 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,180,663
Number of Sequences: 59808
Number of extensions: 541368
Number of successful extensions: 1398
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1394
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)