Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120591.Seq
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   1.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.8  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    23   4.8  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    23   4.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.3  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 17/72 (23%), Positives = 33/72 (45%)
 Frame = -2

Query: 823 TDIFLYTRAERSRSVT*VIVLLSLAAR*WSRKLHARRNVNVYIINIQRCGKKILSEHLSF 644
           T+I L+   E  R+    + L     + W + L+ R +V  Y+I+++       +E +  
Sbjct: 66  TEIGLFLHEELRRTEAFEVDLEFYLGKEWKKNLNLRDSVTKYLIHLKEIED---TEPILL 122

Query: 643 TERLYYKYSTLL 608
              +Y+ Y  LL
Sbjct: 123 IAYIYHLYMGLL 134


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 98  KSRLQHAYRHVAVVVFVDQLGQTVFFVSFNRLFI 199
           + R +   RH+  V ++D++ + VF  SF  L I
Sbjct: 452 RKRGEKIARHINSVSYIDKVARIVFPASFGLLNI 485


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 428 MLNIMRTGFVNCVFIILLMYTNSLVC 505
           +L+++  GF+  + I L +  N LVC
Sbjct: 22  LLSVLLVGFLFLILIFLSVAGNILVC 47


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 431 LNIMRTGFVNCVFIILLMYTN 493
           LN M +  V C  + LLM TN
Sbjct: 691 LNTMESHEVRCTAVFLLMKTN 711


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 726 NFRDHYRAARDNNTITHVTERDRSARVYKNMSVWTLWS 839
           NF +  +   D N +  V +   S  + KN   WT  S
Sbjct: 13  NFEEFAKVLGDQNLVNTVLQPRPSFELSKNGDEWTFTS 50


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 726 NFRDHYRAARDNNTITHVTERDRSARVYKNMSVWTLWS 839
           NF +  +   D N +  V +   S  + KN   WT  S
Sbjct: 15  NFEEFAKVLGDQNLVNTVLQPRPSFELSKNGDEWTFTS 52


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/27 (25%), Positives = 18/27 (66%)
 Frame = -3

Query: 393 NDLRDRIKSKVDEQFDQLEREYSDKID 313
           ND R R+++ ++   ++ +REY  +++
Sbjct: 404 NDARRRVEAALEAVEEERQREYGIRVE 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,853
Number of Sequences: 438
Number of extensions: 5408
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)