Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120591.Seq
         (857 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66005.2 68418.m08311 Expressed protein                             31   1.3  
At5g66005.1 68418.m08310 Expressed protein                             31   1.3  
At5g07380.1 68418.m00845 hypothetical protein                          31   1.3  
At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to ...    29   3.0  
At5g54210.1 68418.m06753 NLI interacting factor (NIF) family pro...    29   4.0  
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    29   4.0  
At3g27325.1 68416.m03415 expressed protein                             29   5.2  
At5g41940.1 68418.m05106 RabGAP/TBC domain-containing protein si...    28   6.9  
At3g49350.1 68416.m05395 RabGAP/TBC domain-containing protein si...    28   9.1  

>At5g66005.2 68418.m08311 Expressed protein
          Length = 164

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 620 IFII*PFGKAQMLT*YFFPATLNIYNINV 706
           +FII   GK +M +  FFPA LN+ + NV
Sbjct: 108 LFIIDEVGKMEMFSPSFFPAVLNVLDSNV 136


>At5g66005.1 68418.m08310 Expressed protein
          Length = 147

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 620 IFII*PFGKAQMLT*YFFPATLNIYNINV 706
           +FII   GK +M +  FFPA LN+ + NV
Sbjct: 64  LFIIDEVGKMEMFSPSFFPAVLNVLDSNV 92


>At5g07380.1 68418.m00845 hypothetical protein 
          Length = 595

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 127 VAVCVLKPGFENGSNQVLSFEYNPIGNKVIVPFAHEINDTGL 2
           + +C +     +G++Q L F Y P GN  +  F H IN   L
Sbjct: 45  IGLCYILKDRISGNDQQLKFAYTPTGNFCLRDFHHAINSLPL 86


>At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to
           GP:3172044:gnl:PID:d1029570:AB010080
          Length = 1332

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 187 IETYEKYCLPQLVDKHNDCYVAVCVLKPGFENGSNQVL-SFEYNPIGNKVI 38
           IE+  + C     +KHN+ +V      P F + S QVL S E+ PIG  VI
Sbjct: 521 IESGHRICSLDSGNKHNNSHVDTVKSLP-FLSSSQQVLESNEFKPIGEAVI 570


>At5g54210.1 68418.m06753 NLI interacting factor (NIF) family
           protein contains Pfam profile PF03031: NLI interacting
           factor
          Length = 306

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -2

Query: 514 MWRTNQRVGVH*QDYEHAIDKTRSHDV*HFGSYTKRYAQEQRFARQN 374
           +W  ++R  +    Y +  DKTR HDV     YTK YA+E+R   +N
Sbjct: 217 VWPDHKRNLLEITKYNYFSDKTR-HDV----KYTKSYAEEKRDESRN 258


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 176 RKILFAPIGRQTQRLLRGGMRVE 108
           R+I F P+GRQ QR+L   +R+E
Sbjct: 4   REIHFTPVGRQVQRVLEYPLRLE 26


>At3g27325.1 68416.m03415 expressed protein
          Length = 1048

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 24/69 (34%), Positives = 32/69 (46%)
 Frame = +3

Query: 93  FSNPGFNTHTAT*QSLCLSTNWGKQYFS*VSIDFLSV*S*LFKILANLLFNTLPFGNLPN 272
           F NPG      + QS+ LST W K+ F  +  D          +  NL F+T   G LP 
Sbjct: 568 FFNPGDGAVEVSSQSMLLSTYWAKEIF--LKED--------HPLAYNLSFST-SLGLLPA 616

Query: 273 SVHL*NTGC 299
           ++ L  TGC
Sbjct: 617 TLSLKTTGC 625


>At5g41940.1 68418.m05106 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 549

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 14  VNFVSKRHNNFVTNRVVLKR*-HLVAAVLKSRLQHAYRHV 130
           V F+SK  +NF  + V ++R   +V+ ++K +  H YRH+
Sbjct: 389 VGFMSKARHNFRLDEVGIRRQLSMVSKIIKFKDIHLYRHL 428


>At3g49350.1 68416.m05395 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 554

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 14  VNFVSKRHNNFVTNRVVLKR*-HLVAAVLKSRLQHAYRHV 130
           V F+ K  +NF  + V ++R  ++V+ ++KS+    YRH+
Sbjct: 389 VGFMKKARHNFRLDEVGIRRQLNIVSKIIKSKDSQLYRHL 428


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,840,146
Number of Sequences: 28952
Number of extensions: 361794
Number of successful extensions: 1012
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)