Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120590.Seq
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr... 28 1.6
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 2.1
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 2.1
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 2.1
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 27 3.6
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 26 4.7
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 25 8.3
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 8.3
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.3
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 25 8.3
>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -1
Query: 324 LNHARFGNEHCVWVQIQRVALLCPLSGAWCWIWSACSNVDLYLPSTW 184
L+ + FG +W + R L C G WI C V L + S W
Sbjct: 123 LSRSSFGTWGSLWPILNRSVLACVWYGVQAWIGGEC--VVLMIRSIW 167
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 446 DVIAKIDDLTQKLTVANAD 502
D +KID LT+KL VANA+
Sbjct: 618 DSASKIDSLTEKLKVANAE 636
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 298 LITKSGVIQLIMKSKLPYAIELQEWLL 378
L+ K GV+ L+ K KLP+++ ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 27.5 bits (58), Expect = 2.1
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Frame = -3
Query: 721 ENSLLPTS--HTARLWHSCGLLGLAITSCAMSAMRLASCAVLRRAFSQSCRAVSASRRAT 548
EN ++ +S HTAR+W L TS A + M + R S +V S +
Sbjct: 313 ENYIISSSRDHTARVWR------LDATSPAEACMHVL------RGHLASVNSVQYSSKTG 360
Query: 547 IISLANKMSDRLLR--QICVGHRQFLRQIVNFGNNIICIHFNGRRVLA 410
+I A+ SDR LR I GH +R I I C +NG+ +++
Sbjct: 361 LIVTAS--SDRTLRTWDITTGH--CIRIIHAHQRGIACAQYNGKFIVS 404
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 534 ANEMIVARRDAETARQDCENARRKTAQLAN 623
ANE + +RD R+D + +RK QL N
Sbjct: 334 ANEKLAVQRDLSKLREDRLSVQRKKIQLRN 363
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 449 VIAKIDDLTQKL-TVANADLAKQPIAHFVCQRNDCGSTRR*NGSARLRK 592
++A +L Q++ VAN L P++H++ N G ++ + AR+RK
Sbjct: 221 IMAPTRELCQQIYNVANK-LNNNPLSHWIVSCNVIGGEKKKSEKARIRK 268
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 101 GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 226
GDE V+ D S V+ + ++ GKY+ TF H D
Sbjct: 48 GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 486 RWPTQIWRSNRSLILFANEMIVARRDAETARQDCENARRKTAQ 614
RW T+IW L+ +M A R + D N+R+ +Q
Sbjct: 677 RWLTKIWNCVHQLLEREKKMSDAMRQTKLTIVDDHNSRKLESQ 719
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 183 STSTASTNRRLSMPTKSSTMLQIAGKAGRPAVFAPTHSAHYQI 311
S+S++ ++ R S T S + RP VF T +HY I
Sbjct: 162 SSSSSKSSSRSSSRTTSHRTTSHKSSSYRPTVFPYTTISHYNI 204
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +3
Query: 528 LFANEMIVARRDAETARQDCE 590
+FANE+++ + DA++ +QD E
Sbjct: 556 IFANEILIEQADAQSFKQDEE 576
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,925
Number of Sequences: 5004
Number of extensions: 62113
Number of successful extensions: 190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -