Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120590.Seq
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242...    29   2.8  
10_02_0110 - 5371536-5372882                                           29   2.8  
08_02_0358 + 16176373-16176534,16176628-16176739,16176967-161771...    29   4.9  
12_02_0299 - 17051570-17052474,17053542-17053755                       28   6.5  
08_02_1163 + 24820039-24820446                                         28   6.5  
01_06_1510 - 37859664-37861319                                         28   8.6  

>12_01_0318 -
           2425178-2425267,2425830-2426008,2426594-2426654,
           2426851-2427160,2428514-2428777,2432595-2433865
          Length = 724

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 527 FVCQRNDCGSTRR*NGSARLRKRAP 601
           FVC R  C   RR  G ARLR+ +P
Sbjct: 430 FVCSRLACALLRRRRGRARLRRASP 454


>10_02_0110 - 5371536-5372882
          Length = 448

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = -2

Query: 320 ITPDLVMSTVCGCKY---SGSPCFARYLEHGAGFG-RHAQTSICTCRRRGHVLPVHNLHI 153
           I+PD  +S +   +Y   S       +L  G+  G    Q S+CT R R H L VH    
Sbjct: 320 ISPDGKLSFIVTSRYFDGSAGVSSCYHLAFGSNGGCTREQVSVCTWRVRLHELRVHRSDA 379

Query: 152 LNC-WRC 135
           +N  W C
Sbjct: 380 MNLRWFC 386


>08_02_0358 +
           16176373-16176534,16176628-16176739,16176967-16177151,
           16177325-16177330
          Length = 154

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/85 (25%), Positives = 33/85 (38%)
 Frame = -1

Query: 657 WLSRLAQCPPCGWPAAPFCGARFRNLAEPFQRRVEPQSFRWQTK*AIGCFAKSALATVNF 478
           ++S+L + PP G    P+C A   +  E F       + +W      G FA SA  T+ F
Sbjct: 69  FISKLVKPPPAGTWLTPWCSAMAGSTIEVFGLFGVKPNGQWSITGGTGTFA-SAHGTIKF 127

Query: 477 CVRSSILAITSFVSISTAGAYLPRA 403
               S  A      +     + P A
Sbjct: 128 TNSQSSTATDDIRELDIHVFHTPEA 152


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 645 LAQCPPCGWPAAPFCGAR 592
           L  CPP  WP  PFC  R
Sbjct: 206 LFYCPPWPWPPIPFCTPR 223


>08_02_1163 + 24820039-24820446
          Length = 135

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 155 YVNCERAIRVHVDGKYKSTFEHADQIQHHAPDSGQSRATRCICTH 289
           +V+ E A    VDG++ +     D +  +A  SG+  A R + TH
Sbjct: 14  FVDDEAAFNASVDGRFAALDADRDGVLSYADMSGELMALRVLDTH 58


>01_06_1510 - 37859664-37861319
          Length = 551

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 282 APTHSAHYQIWRDSTDNEVQIALRHRITRMA 374
           AP H  H+Q++R S      +ALRHR  R A
Sbjct: 24  APAHG-HHQVFRCSAAKPSPLALRHRAGRPA 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,710,865
Number of Sequences: 37544
Number of extensions: 466491
Number of successful extensions: 1592
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)