Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120590.Seq
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_45241| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_59424| Best HMM Match : Gemini_C4 (HMM E-Value=4.5)                 29   5.0  
SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)                 29   5.0  
SB_19726| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)                   28   8.8  

>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1421

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 223 RPNPAPCSR*RAKQGDPLYLHPHTVLITKSGVIQLIMKSKL 345
           RP+  PC R  + +    +LH  ++L+TK G ++++   K+
Sbjct: 125 RPSSLPCGRCLSDRDASKFLHTTSILLTKKGSLKIVFNEKI 165


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 534  ANEMIVARRDAETARQDCENARRKTAQLANRMADIAQDVIAKPSNPQLC 680
            A+ ++V R DAE   +     RR+    +N    I  ++ +K +NP LC
Sbjct: 3361 ASSLVVVREDAEPVAR---RRRRRAVDTSNTTTPITTNLTSKVTNPSLC 3406


>SB_45241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 516 RSLILFANEMIVARRDAETARQDCE-NARRKTAQLANRMADIAQDVIAKPSN 668
           RS    AN  I ++RD  T++ DC+ +A  K     N  ++  + +I K  N
Sbjct: 55  RSTSSLANNTIPSKRDKRTSKHDCDGSANNKRTNKHNDGSNNKRTIITKHDN 106


>SB_59424| Best HMM Match : Gemini_C4 (HMM E-Value=4.5)
          Length = 235

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -3

Query: 712 LLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAVLRRAFSQSCRAVSASRRATIIS 539
           +LP+     L H CG  G    SC  SA  + + +++ R  + +   V+ S  A  IS
Sbjct: 28  VLPSLPVLSLTHGCGCSG-GSKSCCGSASSIEASSIVTRTHASTAFMVAGSNNAEWIS 84


>SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)
          Length = 333

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = -1

Query: 270 VALLCPLSGAWCWIWSACSNVDLYLPSTWTRI 175
           +  + P+  + C +++ C N+ L++P T+  I
Sbjct: 249 ICWVVPIYDSMCTVYNVCKNIPLHIPQTFLHI 280


>SB_19726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = -1

Query: 270 VALLCPLSGAWCWIWSACSNVDLYLPSTWTRI 175
           +  + P+  + C +++ C N+ L++P T+  I
Sbjct: 112 ICWVVPIYDSMCTVYNVCKNIPLHIPQTFLHI 143


>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -2

Query: 290 CGCKYSGSPCFARYLEHGAGFGRHAQTSICTCRRRGHVLPVHNLHILNCWRCPW 129
           C C Y G+    +  E      R A+  +CT  R   +L  +N  + NC RC +
Sbjct: 175 CVCVYGGTGISEQIAE----LKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTY 224


>SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)
          Length = 1195

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +2

Query: 173  AIRVHVDGKYKSTFEHADQIQHHAPDSGQSRATRCICTHTQCSLPNLA*FN 325
            A+R+HV G  K     + Q+  HAP +  S     +C  T C   N   FN
Sbjct: 1107 ALRLHVTGVTKLLLPLSRQLASHAPSATASVHRTLVCVAT-CVSTNKMRFN 1156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,436,923
Number of Sequences: 59808
Number of extensions: 518242
Number of successful extensions: 1344
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)