Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120590.Seq
(723 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 29 2.5
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 28 5.9
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 28 5.9
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 28 7.8
U29378-6|AAA68726.2| 310|Caenorhabditis elegans Uncoordinated p... 28 7.8
AF515600-1|AAM76039.1| 310|Caenorhabditis elegans UNC-98 protein. 28 7.8
AF026215-4|AAB71322.1| 843|Caenorhabditis elegans Hypothetical ... 28 7.8
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 28 7.8
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 28 7.8
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 28 7.8
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 28 7.8
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 28 7.8
>Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical
protein ZK632.5 protein.
Length = 824
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +2
Query: 119 RFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHHAP----DSGQSRATRCICT 286
R +D +SLK V+ + + V +DG+YK ++++ P D + TR +
Sbjct: 93 RLSDEDFENSLKEVSLSQKLMVRIDGEYKYRLYSKPIVRNNIPQLAWDISPALRTRKVAE 152
Query: 287 HTQCSLPN 310
+ S PN
Sbjct: 153 KDEISPPN 160
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 440 TNDVIAKIDDLTQKLTVANADLAKQPIAHFVCQRNDCGS 556
TN + KI +++ ++ + A AK ++H Q+N C S
Sbjct: 1556 TNKYVQKIREVSPRIQIRVAHPAKHTVSHITHQKNPCQS 1594
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +3
Query: 498 QIWRSNRSLILFANEMIVARRDAETARQDCENARRKTAQLANRMADIAQDV 650
+I +NR + F+NE+ A+R AE ++ +N + LA + + + +
Sbjct: 1313 KIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKESI 1363
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +3
Query: 498 QIWRSNRSLILFANEMIVARRDAETARQDCENARRKTAQLANRMADIAQDV 650
+I +NR + F+NE+ A+R AE ++ +N + LA + + + +
Sbjct: 1313 KIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKESI 1363
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +3
Query: 498 QIWRSNRSLILFANEMIVARRDAETARQDCENARRKTAQLANRMADIAQDV 650
+I +NR + F+NE+ A+R AE ++ +N + LA + + + +
Sbjct: 1313 KIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKESI 1363
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 419 APAVEMDTNDVIAKIDDLTQKLTVANADL 505
A + N +I KIDD T +L + +ADL
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADL 4844
>U29378-6|AAA68726.2| 310|Caenorhabditis elegans Uncoordinated
protein 98 protein.
Length = 310
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 185 HVDGKYKSTFEHADQIQHHAPDSGQSRATRCICTHT 292
+V GK +FE A Q+++HA + +C C T
Sbjct: 141 YVCGKCGDSFEFACQLEYHAAQHSEIDGYKCECGRT 176
>AF515600-1|AAM76039.1| 310|Caenorhabditis elegans UNC-98 protein.
Length = 310
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 185 HVDGKYKSTFEHADQIQHHAPDSGQSRATRCICTHT 292
+V GK +FE A Q+++HA + +C C T
Sbjct: 141 YVCGKCGDSFEFACQLEYHAAQHSEIDGYKCECGRT 176
>AF026215-4|AAB71322.1| 843|Caenorhabditis elegans Hypothetical
protein F09G2.4 protein.
Length = 843
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/41 (48%), Positives = 22/41 (53%)
Frame = +3
Query: 552 ARRDAETARQDCENARRKTAQLANRMADIAQDVIAKPSNPQ 674
A RDAE R E ARR+ AQ AN D D IA P P+
Sbjct: 410 AERDAEETRLRMERARRQ-AQ-ANESDDSDDDDIAAPIVPR 448
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 419 APAVEMDTNDVIAKIDDLTQKLTVANADL 505
A + N +I KIDD T +L + +ADL
Sbjct: 4176 ANVISAGANAIIEKIDDTTYRLIIPSADL 4204
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 419 APAVEMDTNDVIAKIDDLTQKLTVANADL 505
A + N +I KIDD T +L + +ADL
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADL 4844
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 419 APAVEMDTNDVIAKIDDLTQKLTVANADL 505
A + N +I KIDD T +L + +ADL
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADL 4844
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 419 APAVEMDTNDVIAKIDDLTQKLTVANADL 505
A + N +I KIDD T +L + +ADL
Sbjct: 4176 ANVISAGANAIIEKIDDTTYRLIIPSADL 4204
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 419 APAVEMDTNDVIAKIDDLTQKLTVANADL 505
A + N +I KIDD T +L + +ADL
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADL 4844
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,926,974
Number of Sequences: 27780
Number of extensions: 378793
Number of successful extensions: 1100
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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