Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120590.Seq
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08780.1 68418.m01041 histone H1/H5 family protein contains P...    30   1.4  
At5g08630.1 68418.m01026 DDT domain-containing protein low simil...    30   1.4  
At2g02790.1 68415.m00222 calmodulin-binding family protein very ...    30   1.8  
At4g25320.1 68417.m03643 DNA-binding protein-related contains Pf...    29   3.1  
At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-contain...    29   4.1  
At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-contain...    29   4.1  
At5g35695.1 68418.m04268 hypothetical protein                          28   7.2  
At5g07610.1 68418.m00872 F-box family protein similar to unknown...    28   7.2  
At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identic...    28   7.2  
At4g13430.1 68417.m02096 aconitase family protein / aconitate hy...    27   9.5  

>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 457

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 167 ERAIRVHVDGKYKST-FEHADQIQHHAPDSGQSRATRCICTHTQCSLP 307
           E AI   +  KYK+  F H + + HH     + R   C C +   SLP
Sbjct: 77  EDAISEFIKSKYKNLPFAHTNLLSHHLAKLVEKREILCDCNNDCYSLP 124


>At5g08630.1 68418.m01026 DDT domain-containing protein low
           similarity to SP|Q9NRL2 Bromodomain adjacent to zinc
           finger domain protein 1A (ATP-utilizing chromatin
           assembly and remodeling factor 1) (ATP-dependent
           chromatin remodelling protein) (Williams syndrome
           transcription factor-related chromatin remodeling factor
           180) {Homo sapiens}; contains Pfam profile PF02791: DDT
           domain
          Length = 723

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/84 (29%), Positives = 39/84 (46%)
 Frame = +2

Query: 359 NYKNGFWRRSFLKCYARGKYAPAVEMDTNDVIAKIDDLTQKLTVANADLAKQPIAHFVCQ 538
           ++K   + R+FLK + R     ++    ND +AK  ++T+K+     +         V Q
Sbjct: 170 SWKKFPFSRNFLKSFIRDSTCHSIPWVVNDYLAKAHEITRKIPKELQNKYVFQNGELVQQ 229

Query: 539 RNDCGSTRR*NGSARLRKRAPQNG 610
           R     T R N   R RKRA +NG
Sbjct: 230 RKQEDKTGREN---RKRKRA-ENG 249


>At2g02790.1 68415.m00222 calmodulin-binding family protein very low
           similarity to SP|P12036 Neurofilament triplet H protein
           {Homo sapiens}; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 636

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +3

Query: 168 NGQYVSTSTASTNRRLSMPTKSSTMLQIAG--KAGR--PAVFAPTHSAHYQI 311
           NG   S +T  ++RR S+P K     Q  G  ++GR  P+  APT SA  +I
Sbjct: 472 NGNVASENTKPSDRRASLPAKIENHHQDDGLTQSGRKIPSYMAPTASAKARI 523


>At4g25320.1 68417.m03643 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 404

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 186 TSTASTNRRLSMPTKSSTMLQIAGKAGRPAVFAP 287
           T  A+T   L+MPT++++  Q+  K GRP  + P
Sbjct: 64  TENAATPFSLTMPTENTSAEQLKKKRGRPRKYNP 97


>At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 870

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 41  QVKIGEFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIR 181
           Q   G F    DT   +Y+       RF+ +D  S+L YVN ER  R
Sbjct: 691 QTHFGSFSDARDTH--QYLQNHNPQKRFLQQDFDSTLAYVNHERKQR 735


>At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 822

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 41  QVKIGEFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIR 181
           Q   G F    DT   +Y+       RF+ +D  S+L YVN ER  R
Sbjct: 691 QTHFGSFSDARDTH--QYLQNHNPQKRFLQQDFDSTLAYVNHERKQR 735


>At5g35695.1 68418.m04268 hypothetical protein
          Length = 211

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 650 HVLRNVRHAVGQLRRFAARVFAILPSRFSVASSHNHFVGKQ 528
           H L N+RH    LR    R+F I  SRF++  S   F  K+
Sbjct: 87  HELFNLRHV--SLRNVIERIFGIFKSRFAIFKSAPPFSYKK 125


>At5g07610.1 68418.m00872 F-box family protein similar to unknown
           protein (emb|CAB85517.1)
          Length = 420

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 183 STSTASTNRRLSMPT-KSSTML-QIAGKAGRPAVFAPTHSAHYQIW 314
           S++  +TN  +  PT K  T+L QIAG       F P+ S HY+++
Sbjct: 142 SSNHFNTNYYVYNPTTKQYTLLHQIAGHIALSLAFDPSRSPHYKVF 187


>At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identical
           to SP|Q9ZWM9 DNA-binding protein RAV1 {Arabidopsis
           thaliana}, RAV1 GI:3868857 from [Arabidopsis thaliana]
          Length = 344

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = -2

Query: 632 RHAVGQLRRFAARVFAILPSRFSVASSHNHFVGKQNERSVASPNLRWPPSIFASDRQFW 456
           + +VG L R  +    +L S   V +        + +  V  PN RW   I+   ++ W
Sbjct: 27  KSSVGNLYRMGSGSSVVLDSENGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVW 85


>At4g13430.1 68417.m02096 aconitase family protein / aconitate
           hydratase family protein contains Pfam profile PF00330:
           Aconitase family (aconitate hydratase
          Length = 509

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 627 CGWPAAPFCGARFRNLAEPFQRRVEPQ 547
           C  PA+P CGA     A+ + R  EPQ
Sbjct: 437 CDTPASPSCGACLGGPADTYARLNEPQ 463


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,952,946
Number of Sequences: 28952
Number of extensions: 344205
Number of successful extensions: 941
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)