Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120589.Seq
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    35   0.015
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    34   0.026
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    29   0.98 
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    28   1.7  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   3.9  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    26   6.9  
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    26   6.9  

>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = +2

Query: 353 EEKPWTKTEQELLEQAIKTFPVNTPERWEKISDCIPNRSKKDCMKRYKEL 502
           EEKPW+  E  LL +AI+T+     + W +I+  + +R+K+ C+  + ++
Sbjct: 246 EEKPWSNQETLLLLEAIETY----GDDWNQIALHVGSRTKEQCLIHFLQI 291


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 33.9 bits (74), Expect = 0.026
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 365 WTKTEQELLEQAIKTFPVNTPERWEKISDCIPNRSKKDCMKRYKELVE 508
           W  TE E+L+ A+  +  N   +W +IS  +  ++ K C  R+ E ++
Sbjct: 9   WKNTEDEILKAAVSKYGKN---QWARISSLLVRKTPKQCKARWYEWID 53


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +2

Query: 269 KISNHVDNTGISKSDKLVNGTTTAEI---KPEEKPWTKTEQELLEQAIKTFPVN 421
           +  + +D+T  S+S ++ +  TT++    +P + P  KTE  L+      FP N
Sbjct: 174 RCGDSMDDTFFSESQRVTSPLTTSQTVQTQPPQSPEAKTELSLINTKTVIFPEN 227


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 378 NKNCWNKQLRRFQ*TLQSGGRRSLTVSRIDQ 470
           N+ CW KQL RF+ TL+  G  S TV  +D+
Sbjct: 470 NQVCWMKQLERFKYTLRVAG--SDTVLPLDK 498


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
 Frame = +2

Query: 344  IKPEEKPWTKTEQELLEQAIKTFPV-----NTPERWEKISDCIPNRSKKDCMKRYKELVE 508
            +K  +  +T  E E L +A+    +     N   +WE +  C PNR      +RY  + +
Sbjct: 884  VKRFKNDFTSDEDETLIRAVVITQIYYGGTNRLIKWEAVQKCFPNRDIYALTRRYLSIRQ 943

Query: 509  **KQRNKPQTCLNNTQMI 562
              K +   Q    N Q +
Sbjct: 944  HTKFKGLQQFLSENWQQM 961


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 359 KPWTKTEQELLEQAIKTFPVNTPE 430
           K W   ++E LE+A + F  NTP+
Sbjct: 374 KTWIAFQEETLERAWRNFSGNTPQ 397


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/59 (16%), Positives = 28/59 (47%)
 Frame = +3

Query: 18  VEWTVEMTQMLIKAVNLFPAGTNQRWEVVANFLNQHCTFIDDKRLSAKEVLNKAKDLQS 194
           +EWT++  +  ++ +++    +  R E +  F+N +     D        ++K ++ Q+
Sbjct: 51  IEWTIDSLRQFVQQLSVRQNMSKDRREALTYFINSYNDLFHDVYYGDGRSMSKTEEAQT 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,050
Number of Sequences: 5004
Number of extensions: 63567
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)