Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120586.Seq
(806 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X95191-1|CAA64490.1| 290|Homo sapiens delta-sarcoglycan protein. 31 6.5
BX537948-1|CAD97916.1| 289|Homo sapiens hypothetical protein pr... 31 6.5
BC020740-1|AAH20740.1| 290|Homo sapiens sarcoglycan, delta (35k... 31 6.5
AY273815-1|AAQ16156.1| 2623|Homo sapiens bone specific CMF608 pr... 31 6.5
S73849-1|AAB31735.1| 873|Homo sapiens very low density lipoprot... 30 8.6
L22431-1|AAA61344.1| 873|Homo sapiens very low density lipoprot... 30 8.6
L20470-1|AAA53684.1| 873|Homo sapiens very low density lipoprot... 30 8.6
D16532-1|BAA03969.1| 873|Homo sapiens very low density lipoprot... 30 8.6
D16494-1|BAA03946.1| 845|Homo sapiens very low density lipoprot... 30 8.6
D16493-1|BAA03945.1| 873|Homo sapiens very low density lipoprot... 30 8.6
DQ067198-1|AAY46157.1| 873|Homo sapiens very low density lipopr... 30 8.6
BC142653-1|AAI42654.1| 845|Homo sapiens very low density lipopr... 30 8.6
AL450467-4|CAH72453.1| 752|Homo sapiens very low density lipopr... 30 8.6
AL450467-3|CAH72455.1| 845|Homo sapiens very low density lipopr... 30 8.6
AL450467-2|CAH72454.1| 873|Homo sapiens very low density lipopr... 30 8.6
AK092381-1|BAC03874.1| 752|Homo sapiens protein ( Homo sapiens ... 30 8.6
>X95191-1|CAA64490.1| 290|Homo sapiens delta-sarcoglycan protein.
Length = 290
Score = 30.7 bits (66), Expect = 6.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 166 FEAVVCENGGLFVLTGGAAVTCHID 240
FE VC NG LF+ GA TC I+
Sbjct: 261 FEICVCANGRLFLSQAGAGSTCQIN 285
>BX537948-1|CAD97916.1| 289|Homo sapiens hypothetical protein
protein.
Length = 289
Score = 30.7 bits (66), Expect = 6.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 166 FEAVVCENGGLFVLTGGAAVTCHID 240
FE VC NG LF+ GA TC I+
Sbjct: 260 FEICVCANGRLFLSQAGAGSTCQIN 284
>BC020740-1|AAH20740.1| 290|Homo sapiens sarcoglycan, delta (35kDa
dystrophin-associated glycoprotein) protein.
Length = 290
Score = 30.7 bits (66), Expect = 6.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 166 FEAVVCENGGLFVLTGGAAVTCHID 240
FE VC NG LF+ GA TC I+
Sbjct: 261 FEICVCANGRLFLSQAGAGSTCQIN 285
>AY273815-1|AAQ16156.1| 2623|Homo sapiens bone specific CMF608
protein.
Length = 2623
Score = 30.7 bits (66), Expect = 6.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 279 DYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQNGAYRLTV 449
D G +M + T + C+ +Y + D+LT +I + PLV + YQ TV
Sbjct: 531 DKSGKLELQMADSFDTGVYHCISSNYDDADILTYRITVVEPLV--EAYQENGIHHTV 585
>S73849-1|AAB31735.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 30.3 bits (65), Expect = 8.6
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 419 LSKRSL*TNGQIDLHLNRHIKCIKTQYNDELIWLDLHYKLI*QAHTASTSIPTTAL 586
LS++++ + ID + RH+K I YN I +D YK I AS +I L
Sbjct: 488 LSQKAI-FSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVATL 542
>L22431-1|AAA61344.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 30.3 bits (65), Expect = 8.6
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 419 LSKRSL*TNGQIDLHLNRHIKCIKTQYNDELIWLDLHYKLI*QAHTASTSIPTTAL 586
LS++++ + ID + RH+K I YN I +D YK I AS +I L
Sbjct: 488 LSQKAI-FSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVATL 542
>L20470-1|AAA53684.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 30.3 bits (65), Expect = 8.6
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 419 LSKRSL*TNGQIDLHLNRHIKCIKTQYNDELIWLDLHYKLI*QAHTASTSIPTTAL 586
LS++++ + ID + RH+K I YN I +D YK I AS +I L
Sbjct: 488 LSQKAI-FSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVATL 542
>D16532-1|BAA03969.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 30.3 bits (65), Expect = 8.6
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 419 LSKRSL*TNGQIDLHLNRHIKCIKTQYNDELIWLDLHYKLI*QAHTASTSIPTTAL 586
LS++++ + ID + RH+K I YN I +D YK I AS +I L
Sbjct: 488 LSQKAI-FSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVATL 542
>D16494-1|BAA03946.1| 845|Homo sapiens very low density lipoprotein
receptor protein.
Length = 845
Score = 30.3 bits (65), Expect = 8.6
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 419 LSKRSL*TNGQIDLHLNRHIKCIKTQYNDELIWLDLHYKLI*QAHTASTSIPTTAL 586
LS++++ + ID + RH+K I YN I +D YK I AS +I L
Sbjct: 488 LSQKAI-FSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVATL 542
>D16493-1|BAA03945.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 30.3 bits (65), Expect = 8.6
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 419 LSKRSL*TNGQIDLHLNRHIKCIKTQYNDELIWLDLHYKLI*QAHTASTSIPTTAL 586
LS++++ + ID + RH+K I YN I +D YK I AS +I L
Sbjct: 488 LSQKAI-FSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVATL 542
>DQ067198-1|AAY46157.1| 873|Homo sapiens very low density
lipoprotein receptor protein.
Length = 873
Score = 30.3 bits (65), Expect = 8.6
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 419 LSKRSL*TNGQIDLHLNRHIKCIKTQYNDELIWLDLHYKLI*QAHTASTSIPTTAL 586
LS++++ + ID + RH+K I YN I +D YK I AS +I L
Sbjct: 488 LSQKAI-FSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVATL 542
>BC142653-1|AAI42654.1| 845|Homo sapiens very low density
lipoprotein receptor protein.
Length = 845
Score = 30.3 bits (65), Expect = 8.6
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 419 LSKRSL*TNGQIDLHLNRHIKCIKTQYNDELIWLDLHYKLI*QAHTASTSIPTTAL 586
LS++++ + ID + RH+K I YN I +D YK I AS +I L
Sbjct: 488 LSQKAI-FSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVATL 542
>AL450467-4|CAH72453.1| 752|Homo sapiens very low density
lipoprotein receptor protein.
Length = 752
Score = 30.3 bits (65), Expect = 8.6
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 419 LSKRSL*TNGQIDLHLNRHIKCIKTQYNDELIWLDLHYKLI*QAHTASTSIPTTAL 586
LS++++ + ID + RH+K I YN I +D YK I AS +I L
Sbjct: 367 LSQKAI-FSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVATL 421
>AL450467-3|CAH72455.1| 845|Homo sapiens very low density
lipoprotein receptor protein.
Length = 845
Score = 30.3 bits (65), Expect = 8.6
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 419 LSKRSL*TNGQIDLHLNRHIKCIKTQYNDELIWLDLHYKLI*QAHTASTSIPTTAL 586
LS++++ + ID + RH+K I YN I +D YK I AS +I L
Sbjct: 488 LSQKAI-FSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVATL 542
>AL450467-2|CAH72454.1| 873|Homo sapiens very low density
lipoprotein receptor protein.
Length = 873
Score = 30.3 bits (65), Expect = 8.6
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 419 LSKRSL*TNGQIDLHLNRHIKCIKTQYNDELIWLDLHYKLI*QAHTASTSIPTTAL 586
LS++++ + ID + RH+K I YN I +D YK I AS +I L
Sbjct: 488 LSQKAI-FSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVATL 542
>AK092381-1|BAC03874.1| 752|Homo sapiens protein ( Homo sapiens
cDNA FLJ35062 fis, clone OCBBF2019195, highly similar to
VERY LOW-DENSITY LIPOPROTEIN RECEPTOR PRECURSOR. ).
Length = 752
Score = 30.3 bits (65), Expect = 8.6
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 419 LSKRSL*TNGQIDLHLNRHIKCIKTQYNDELIWLDLHYKLI*QAHTASTSIPTTAL 586
LS++++ + ID + RH+K I YN I +D YK I AS +I L
Sbjct: 367 LSQKAI-FSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVATL 421
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,521,724
Number of Sequences: 237096
Number of extensions: 2027383
Number of successful extensions: 4426
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4426
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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