Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120586.Seq
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20220.1 68417.m02955 hypothetical protein                          28   6.3  
At2g02680.1 68415.m00207 DC1 domain-containing protein contains ...    28   8.4  

>At4g20220.1 68417.m02955 hypothetical protein 
          Length = 158

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 782 NLLVKNVFSKHINWSFKTRCNDDTN 708
           NL+ + V+   INW FKT  +  TN
Sbjct: 116 NLISERVYLPEINWKFKTEPHTSTN 140


>At2g02680.1 68415.m00207 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 649

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 528 CKSNQINSSLYCVFMHFIWRFKCKSI*PLVYRLRFDN 418
           CKS + N  L C+   FI  F+C ++ P V R + D+
Sbjct: 501 CKSTKENQVLNCIEGDFIICFECATL-PYVIRYKHDD 536


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,126,660
Number of Sequences: 28952
Number of extensions: 319114
Number of successful extensions: 777
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)