Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120585.Seq
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    28   1.4  
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...    27   2.4  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   2.4  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   3.2  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       27   4.3  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    26   5.6  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    25   9.9  

>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 750  LRFCARRNAYFSPPNAHTANECSSWGLLGLAI 655
            LR C   N+ F  PN+HT N  S +  + L I
Sbjct: 906  LRICTIPNSIFDSPNSHTTNSNSFFTKVSLDI 937


>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 458 GVIEELNKKLAFASESLPRPTKKLYILNNALVTANAGL-VQANTMLNEARR 607
           G++    KK+           +KLY + + ++ A AGL   AN ++N ARR
Sbjct: 42  GIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARR 92


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
 Frame = -3

Query: 744 FCARRNAYFSPPNAHTANECSSWGLLGLAITSCAMSAMRLASCAVSRRASFNI-----VL 580
           FC+R      PP  +    C+S G + L     A    R  SCA+S   + N+     ++
Sbjct: 191 FCSRETNM--PPTWYLYVLCTSEGEVLLPQKWLASKTARGTSCALSSAVASNLAIGLDLV 248

Query: 579 ACTNPALAVTNALFKMYNFFVGLGRLSLANANFL 478
             T  A++ T    +M +F +G G  SL  A+ L
Sbjct: 249 TATQNAVSYTQRALEM-SFHLGRGANSLDYASAL 281


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 309 LITKEGVIQLIMKSKLPYAV 368
           L+ K+GV+ L+ K KLP++V
Sbjct: 542 LLVKDGVVHLVDKVKLPFSV 561


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +3

Query: 360 YAVELQAWLLEEVIPQCCARASTRRPSRWTQIMV*LKS*IKSWRLLAKVCRGQR 521
           YA  LQ    +E + +   R   R PSR  +I V + S I+ WR    +CR  R
Sbjct: 78  YAFRLQI-ASKEFLNELVRRFPERPPSRLNKIQVMILSLIEEWR--KTICRVDR 128


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +1

Query: 76  EDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSESGSIPYT 249
           E +FTL+ ++E G  + +    DIA +L++++ +Q         Y+  Y+  G+ P++
Sbjct: 386 ETSFTLQALVESGLYEKEAFKPDIAKALEFLDRQQIRTQYEGSGYR--YNSLGAWPFS 441


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 662 WLSRLAQCPPCGWPAAPFRGAPRL 591
           W+SR   CP CG    P  G  +L
Sbjct: 175 WISRYRFCPGCGKRNIPTMGGTKL 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,986
Number of Sequences: 5004
Number of extensions: 68528
Number of successful extensions: 212
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)