Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120585.Seq
(824 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50786| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.37
SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.37
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.37
SB_25345| Best HMM Match : DUF866 (HMM E-Value=2.3) 32 0.49
SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_13996| Best HMM Match : MOSP_C (HMM E-Value=6.9) 32 0.49
SB_24800| Best HMM Match : DUF866 (HMM E-Value=4) 32 0.65
SB_31678| Best HMM Match : ApoC-I (HMM E-Value=4) 32 0.65
SB_2740| Best HMM Match : DUF866 (HMM E-Value=1.1) 31 0.86
SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_25363| Best HMM Match : DUF866 (HMM E-Value=3.6) 30 2.6
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_14614| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_48517| Best HMM Match : DUF866 (HMM E-Value=1.9) 29 4.6
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_16225| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_58921| Best HMM Match : DUF286 (HMM E-Value=4.9) 28 8.0
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09) 28 8.0
>SB_50786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 32.7 bits (71), Expect = 0.37
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 511 EANEKIIHFEQCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 627
EA+ I+ ++C+G Q+R+G S +KR P G+ G+
Sbjct: 326 EADNIIVKKKECIGHVQKRVGDSLRKLKRDTPGLGSKGK 364
>SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 595
Score = 32.7 bits (71), Expect = 0.37
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 511 EANEKIIHFEQCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 627
EA+ I+ ++C+G Q+R+G S +KR P G+ G+
Sbjct: 337 EADNIIVKKKECIGHVQKRVGDSLRKLKRDTPGLGSKGK 375
>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 32.7 bits (71), Expect = 0.37
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Frame = -2
Query: 319 LVMSTVCGCRYSGSPCLTTLSGPGYMV*TPTRCTSFC------IFCQH*LSQLVYNLHIL 158
+VM TVC CRY S C+ +L V T C S C + C S+ V+++ +
Sbjct: 246 VVMCTVCACRYVHSVCV-SLRSQCVRVIMYTVCVSLCAQCMRVVMCTVCASRYVHSVCVS 304
Query: 157 NCWRCL 140
C +C+
Sbjct: 305 LCTQCM 310
>SB_25345| Best HMM Match : DUF866 (HMM E-Value=2.3)
Length = 257
Score = 32.3 bits (70), Expect = 0.49
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 511 EANEKIIHFEQCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 627
EA+ I+ ++C+G Q+R+G S +KR P G G+
Sbjct: 136 EADNIIVKKKECIGHVQKRVGNSLRKLKRDTPGLGGKGK 174
>SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 32.3 bits (70), Expect = 0.49
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 511 EANEKIIHFEQCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 627
EA+ I+ ++C+G Q+R+G S +KR P G G+
Sbjct: 525 EADNIIVKKKECIGHVQKRVGNSLRKLKRDTPGLGGKGK 563
>SB_13996| Best HMM Match : MOSP_C (HMM E-Value=6.9)
Length = 288
Score = 32.3 bits (70), Expect = 0.49
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 511 EANEKIIHFEQCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 627
EA+ I+ ++C+G Q+R+G S +KR P G G+
Sbjct: 56 EADNIIVKKKECIGHVQKRVGNSLRKLKRDTPGLGGKGK 94
>SB_24800| Best HMM Match : DUF866 (HMM E-Value=4)
Length = 393
Score = 31.9 bits (69), Expect = 0.65
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 511 EANEKIIHFEQCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 627
EA I+ ++C+G Q+R+G S +KR P G G+
Sbjct: 136 EAGNIIVKKKECIGHVQKRVGNSLRKLKRDTPGLGGKGK 174
>SB_31678| Best HMM Match : ApoC-I (HMM E-Value=4)
Length = 298
Score = 31.9 bits (69), Expect = 0.65
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 511 EANEKIIHFEQCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 627
EA+ I+ ++C+G Q+R+G S +KR P G G+
Sbjct: 41 EADNIIVKKKECIGHVQKRVGNSLRKLKRDIPGLGGKGK 79
>SB_2740| Best HMM Match : DUF866 (HMM E-Value=1.1)
Length = 175
Score = 31.5 bits (68), Expect = 0.86
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 511 EANEKIIHFEQCVGDRQRRIGAS*HNVKRGAPRNGAA 621
EA+ I+ ++C+G Q+R+G S +KR P G A
Sbjct: 136 EADNIIVKKKECIGHVQKRVGNSLRKLKRDTPGLGVA 172
>SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1924
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 508 AEANEKIIHFEQCVGDRQRRIGAS*HNVKRGAP 606
+EA+ I+ ++C+G Q+R+G S +KR P
Sbjct: 343 SEADNIIVKKKECIGHVQKRVGNSLRKLKRDTP 375
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 55 IGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKT 216
I +F+FG ++ + ++KF AK+IA + K++ QAV ++ K Y T
Sbjct: 116 IPDFRFGCSDLYFVCLMTPKSTEIKFDAKEIADA-KWMETSQAVYLDKGKYYYT 168
>SB_25363| Best HMM Match : DUF866 (HMM E-Value=3.6)
Length = 463
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 511 EANEKIIHFEQCVGDRQRRIGAS*HNVKRGAPRNG 615
EA+ I+ ++C+G Q+R+G S +KR P G
Sbjct: 341 EADNIIVKKKECIGHVQKRVGNSLRKLKRDTPGLG 375
>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1507
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +2
Query: 458 GVIEELNKKLAFASESLPRPTKKLYILNNALVTANAGLVQANTMLNEARRETAQLANRMA 637
GV+EEL KL+ E L + ++L + + + NA + L + R L +R+
Sbjct: 799 GVVEELENKLSKLQEKLEQSNQQLAAKSKRIESLNAEMGVLRENLEDERTVVQNLEDRIG 858
Query: 638 DIAQ 649
+ Q
Sbjct: 859 GLIQ 862
>SB_14614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 723 YFSPPNAHTANECSSWGLLGLAITSCAMS 637
YF + +T N C +LG A+TSC S
Sbjct: 59 YFGARDNNTPNNCMLGTMLGFAVTSCVFS 87
>SB_48517| Best HMM Match : DUF866 (HMM E-Value=1.9)
Length = 434
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 511 EANEKIIHFEQCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 627
EA+ I+ ++C+ Q+R+G S +KR P G G+
Sbjct: 183 EADNIIVKKKECIWHVQKRVGNSLRKLKRDTPGLGGKGK 221
>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1531
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = +2
Query: 443 MDTNYGVIEELNKKLAFASESLPRPTKKLYILNNALVTANAGLVQANTMLNEARRETAQL 622
+DT+ V+EE +K+ + L +L + +L + L + + L E+R+E +
Sbjct: 954 LDTSKRVVEEKEQKVTELDKLLNESVDELQQKDKSLKEKDGKLAELDQALKESRKE---I 1010
Query: 623 ANRMADIAQ 649
NR A ++Q
Sbjct: 1011 KNREAQVSQ 1019
>SB_16225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 519
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 261 CLGRGIWYRPRLAVRRFVFFV-NINYHSLFT 172
C G IWY +++ RF+ V YH+L T
Sbjct: 112 CAGASIWYLAIISIDRFIAIVLPFRYHALMT 142
>SB_58921| Best HMM Match : DUF286 (HMM E-Value=4.9)
Length = 352
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 196 VDKKYKTTYSESGSIPYTPAQTTWSSKVTHCTCSRTQCSS 315
+D+ +TY SG I Y QT W+++V+ T + Q S
Sbjct: 155 LDQSCISTYERSGPIVYLYLQTIWTNRVSLLTNALDQSIS 194
>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4275
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 67 KFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSE 228
K GED F + +L++G V V D+ +S CK+ ++ Y+ Y E
Sbjct: 2045 KIGEDAFQVFSILQKGKGVVVDVPGDVFNSFVESGCKREILERCFDMYR-AYKE 2097
>SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)
Length = 1703
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 482 KLAFASESLPRPTKKLYILNNALVTANAGLVQANTMLNEARRETAQLANRMA 637
K A E R K + +L A A L + ++LN RRE A++ ++A
Sbjct: 959 KWVIAMEIYDRVAKVVAPKKESLAKAEASLAETMSLLNAKRRELAEVEAKLA 1010
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,211,041
Number of Sequences: 59808
Number of extensions: 577230
Number of successful extensions: 1435
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -