Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120585.Seq
         (824 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome bet...    30   2.3  
AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome co...    30   2.3  
AF067216-8|AAN84852.1|  954|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF039713-13|AAB96719.2|  690|Caenorhabditis elegans Hypothetical...    28   9.3  

>L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome beta
           subunit protein 6 protein.
          Length = 258

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/77 (23%), Positives = 33/77 (42%)
 Frame = +2

Query: 551 VTANAGLVQANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSLAVCALGGEKYAF 730
           +TA A       M  +A +E A     M+  ++ +  +  NP  +   + CA+ GE +A 
Sbjct: 7   ITAVANATNEMAMFKQAMKEVAAHPEWMS--SRQIERQRWNPYSMEGGSTCAISGENFAI 64

Query: 731 LRAQKRSLNRRLNAWVR 781
           + +  R     +N   R
Sbjct: 65  VASDTRMTQNDINILTR 81


>AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome
           component C5 protein.
          Length = 258

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/77 (23%), Positives = 33/77 (42%)
 Frame = +2

Query: 551 VTANAGLVQANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSLAVCALGGEKYAF 730
           +TA A       M  +A +E A     M+  ++ +  +  NP  +   + CA+ GE +A 
Sbjct: 7   ITAVANATNEMAMFKQAMKEVAAHPEWMS--SRQIERQRWNPYSMEGGSTCAISGENFAI 64

Query: 731 LRAQKRSLNRRLNAWVR 781
           + +  R     +N   R
Sbjct: 65  VASDTRMTQNDINILTR 81


>AF067216-8|AAN84852.1|  954|Caenorhabditis elegans Hypothetical
           protein C35E7.5b protein.
          Length = 954

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -2

Query: 331 ITPSLVMSTVCGCRYSGSPCLTTLSGPGYMV*TPTRCTSFCIFCQH*LSQLV--YNLH 164
           + PS V+  +   + SG     TL  P Y    P    +F ++C H    L+  YN H
Sbjct: 697 VKPSQVLEEIVEVQNSGMTTKKTLEIPSYDTTRPVLYPNFRVYCSHIKDVLINAYNSH 754


>AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical
           protein C35E7.5a protein.
          Length = 1262

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -2

Query: 331 ITPSLVMSTVCGCRYSGSPCLTTLSGPGYMV*TPTRCTSFCIFCQH*LSQLV--YNLH 164
           + PS V+  +   + SG     TL  P Y    P    +F ++C H    L+  YN H
Sbjct: 697 VKPSQVLEEIVEVQNSGMTTKKTLEIPSYDTTRPVLYPNFRVYCSHIKDVLINAYNSH 754


>AF039713-13|AAB96719.2|  690|Caenorhabditis elegans Hypothetical
           protein F57B10.1 protein.
          Length = 690

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
 Frame = +1

Query: 127 KFVAKDIASSLKYVNCKQAVI----VNVDKKYKTTYSESGSIPYTPAQTTWSS 273
           ++ A ++ S+L+ ++ K  +I    ++ D  Y  +  +SGS+P +PA T+ SS
Sbjct: 60  RYTADELYSALEKMDGKSDLIGMDDMDNDNCYSLSPPDSGSLPISPASTSPSS 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,872,163
Number of Sequences: 27780
Number of extensions: 411451
Number of successful extensions: 1060
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)